| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3376 |
|---|
| Symbol | |
|---|
| ID | 4280278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 4022164 |
|---|
| End bp | 4022895 |
|---|
| Gene Length | 732 bp |
|---|
| Protein Length | 243 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638136197 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_752051 |
|---|
| Protein GI | 114564537 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1137] ABC-type (unclassified) transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.681925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAA TTACCTTAAC CGCTGAAAAT CTAGCAAAAA GCTATAAAGC TCGTCAGGTT
GTTAAAGATG TGAGCTTAAC GGTTAAAACC GGCCAAATTG TCGGTCTTTT AGGCCCTAAT
GGTGCAGGTA AAACAACCAC CTTTTATATG GTTGTCGGCT TAGTAAAAAG CGATAAAGGT
CGGATATTAA TTGACGATGA CGACCTTACT GCCGATCCAA TGCATTTGCG CGCCCGCAAA
GGTATAGGTT ACTTACCACA AGAAGCCAGT ATTTTCCGCA AGCTTACCGT TTACGACAAC
ATAATGGCCG TACTGCAAAC TCGCAAAGAG CTCAGTACAG ACCAACGTAT TGAGCAACTT
GAGCATCTAC TCGAAGAATT CCACATTACT CACATACGCG ACAGCCAAGG CATGTCGTTA
TCGGGTGGCG AACGTCGTCG AGTTGAAATT GCGCGCGCTT TAGCTGCTAA TCCAAAATTT
ATTTTGCTTG ATGAGCCTTT TGCTGGTGTT GATCCTATTT CGGTCATCGA CATTAAAAAA
ATCATCCAAC AACTTAAAAA TCGGGGTTTA GGGGTATTAA TTACCGACCA TAACGTACGT
GAAACGCTAG ACGTTTGTGA GCGGGCCTAT ATCGTTAGCC AGGGTAATTT AATCGCCGAA
GGCACACCTG ATGAGATATT AAGTAATCAA CAAGTTCGTG CTGTGTACTT AGGTGAACAA
TTCAAGCTAT AG
|
|---|
| Protein sequence | MTQITLTAEN LAKSYKARQV VKDVSLTVKT GQIVGLLGPN GAGKTTTFYM VVGLVKSDKG
RILIDDDDLT ADPMHLRARK GIGYLPQEAS IFRKLTVYDN IMAVLQTRKE LSTDQRIEQL
EHLLEEFHIT HIRDSQGMSL SGGERRRVEI ARALAANPKF ILLDEPFAGV DPISVIDIKK
IIQQLKNRGL GVLITDHNVR ETLDVCERAY IVSQGNLIAE GTPDEILSNQ QVRAVYLGEQ
FKL
|
|---|
| |