Gene Sfri_3356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3356 
Symbol 
ID4280258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp4005754 
End bp4006395 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content44% 
IMG OID638136177 
ProductSel1 domain-containing protein 
Protein accessionYP_752031 
Protein GI114564517 
COG category[R] General function prediction only 
COG ID[COG0790] FOG: TPR repeat, SEL1 subfamily 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0708547 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTGT CATCGAGAAT CCTTATGTTG CGTATCTGTT TATTATTGTT GAGTGTGGTT 
TCGATCAATG TATTTGCGGT GACAGAAGCC GTCGATATCT ATAGCGATCA ACAATTGATT 
TCGCTCATCC GCTCAAATCA ATATTTACAA CGCGTAAAAG CAGACGACTG TCAGCTGGTT 
CAAGACATTG AAGCCCGTGC AGAAGTATTA CAGCAACCCA TGTATCAGTT TTTATGGGGC 
GAAATGCTTA ATAACGGTGT TTGTGTCAAG GCTCATCCTT CTCGCGGCAT GGCGCTACTG 
CAAACCTCAG CTGAACAAGG TAGTGCTGAA GCGATGGTAA AATTGGCAGA TTATTATTAT 
CGCGGTAAAC TAGTGATTAA AGATCCCAAT CGTGCAGTGC AATACGTGTT GCCTGCTGCA 
GCGAACGGTG ATTTAACCGC AAGAATGACA CTGGTTCGTT TATTTGGTGA AGGCTATGGA 
AGTCCTGCCG ATTATGAACT TGGCTATCAT TGGTTATATA ACAGTATATT TGATGACGAC 
GCCCAACAGA AAAAGGCCTC GTCTTTATTG CAGATGCTCG CTGCAAAAAT GCCCGCCAGT 
ATTGTGGCCA GGGCACAGCA GCCTCAGCTG TACAAACGTT AA
 
Protein sequence
MKVSSRILML RICLLLLSVV SINVFAVTEA VDIYSDQQLI SLIRSNQYLQ RVKADDCQLV 
QDIEARAEVL QQPMYQFLWG EMLNNGVCVK AHPSRGMALL QTSAEQGSAE AMVKLADYYY 
RGKLVIKDPN RAVQYVLPAA ANGDLTARMT LVRLFGEGYG SPADYELGYH WLYNSIFDDD 
AQQKKASSLL QMLAAKMPAS IVARAQQPQL YKR