| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3332 |
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| Symbol | tolC |
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| ID | 4280234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3981377 |
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| End bp | 3982672 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136153 |
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| Product | outer membrane channel protein |
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| Protein accession | YP_752007 |
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| Protein GI | 114564493 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0563453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTCA AAATTGGTTC ATTATACGCA GCATTAGCAT TTGCTATTGC AGCACCAGCA
GTACAAGCTG ACGATTTACT TCAAATTTAT CAGCAAGCAC TCACTAGCGA CCCTATCGTT
TTACAAGCAA AAGCACAACG TGATGCGTTA TACGAGAGTA TTGAAGAAAA CCGTGCGCCG
TTATTGCCAA CCATCAGTGC AAACGTTGGT TATGCCAAAG CGTGGAACGA TCCTGCACAA
GACACCGATG GTTTAACCGG TGGTGTTAGC TTAACTCAAG TTATTTACGA TCATAGTGCA
TGGGTAGGTT TAGATCTTGC TGAAATGGCA GCGTCTCAGG CCGACTCAAC TTATGCTTCA
TCATTACAAG CGTTAATCAC TCGCGTTACT AAAGCATACT TTGACGTATT AACAGCTAAA
GATAACTACG AGTTCCAAGG TGCAGAAAAA GCCGCCATTG AACGTCAGCT TGAACAAACT
AAGCAACGTT TTGCAGTAGG CTTAACCGCA ATTACTGATG TACATGAAGC TCAAGCGCAA
TATGACTTAG CATCAGCATT AGAAATTTTG GCTCAAAACA CCTTAGACAA TAGCTATGAA
GCATTACGTG AAATTACCGG TATAGATCAT AAATCAATAA ATATTCTTGA TACTAACCGT
TTTTCAGCTG GCACACCTGC CCCAGCATCA TCTGCTGACT GGTTGAAAAT GGCCGAAACC
AATAGCATCG ATTTAATGAC TCAACGTATC GCTAAAGATA TCGCCAATGA AACCATTAAA
TTGTACAAAG CTGGCCACAT GCCTTCACTG AACTTCAATG CAGGTTATAA CAAAGGCGTT
GATCAAACTC CTGGTCCAGA TTATGACAAC ACCAATGTTG GCATCACGTT AAGCATTCCA
CTTTTTGAAG GCTTTAAAGT CACTTCTCAA GTGAAGCAAG CTCAATTCAG ATATGTGGAA
GCTAGCGAGA AACTAGAACA AACTCATCGT AGCGTAACCA AAAACGTGCG TAATAACTTT
AACAACGTTA ATGCGTCTAT CAGTTCAATC AAAGCGTATG AGCAATCAGT TATTTCATCT
GAAAGTGCGC TAAAAGCAAC CCAAGCTGGT TTTGAAGTGG GTACGCGTAC GATTGTTGAT
GTGCTAAACC GTACACGTGA CTTGTATGAT TCAAAGCGTC AATTATCTGA AGCTCGTTAT
GGTTATATTA ACTCTATATT AGCGCTTAAA CAGGCTGCTG GTACGTTGAA CGAAGATGAT
GTTATCTCGA TTAACAGCGG ACTAATTGCT CAATAA
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| Protein sequence | MKFKIGSLYA ALAFAIAAPA VQADDLLQIY QQALTSDPIV LQAKAQRDAL YESIEENRAP
LLPTISANVG YAKAWNDPAQ DTDGLTGGVS LTQVIYDHSA WVGLDLAEMA ASQADSTYAS
SLQALITRVT KAYFDVLTAK DNYEFQGAEK AAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASALEIL AQNTLDNSYE ALREITGIDH KSINILDTNR FSAGTPAPAS SADWLKMAET
NSIDLMTQRI AKDIANETIK LYKAGHMPSL NFNAGYNKGV DQTPGPDYDN TNVGITLSIP
LFEGFKVTSQ VKQAQFRYVE ASEKLEQTHR SVTKNVRNNF NNVNASISSI KAYEQSVISS
ESALKATQAG FEVGTRTIVD VLNRTRDLYD SKRQLSEARY GYINSILALK QAAGTLNEDD
VISINSGLIA Q
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