| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3319 |
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| Symbol | psd |
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| ID | 4280221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3965489 |
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| End bp | 3966355 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136140 |
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| Product | phosphatidylserine decarboxylase |
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| Protein accession | YP_751994 |
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| Protein GI | 114564480 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0688] Phosphatidylserine decarboxylase |
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| TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00181452 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGACTCAA TTAAAATTGC TTTGCAATAC ATGCTACCAA AACATTTTCT GTCGCGTTTA
GTGGGCAAGT TTGCTGCAGC TGAAGCAGGT GCTATCACCA CGGCAGTCAT TAAATGGTTT
ATCAAACAGT ACAAAATTGA TATGTCTGAA GCACAGCAAC CTGAGCCCGA AGCCTATAAG
ACTTTTAATG CATTTTTTAC CCGCGCATTA AAGCCTGAAC TAAGACCTAT CTGCCAAGAA
AGTAATATGA TGGCGCACCC TGTTGACGGT GCGGTAAGCC AATGTGGTCC AATTGAAGCG
GGCAATATTT TTCAGGCTAA AGGCCATAGT TACACCTCTG AAGCATTGTT AGGTGGTAAT
AAGACCGATG CAGCCCGTTT TGATGGTGGT GATTTTGCCA CCATTTATTT GGCCCCAAAA
GATTACCATC GCCTGCATAT GCCTATTACA GGTACATTAT CAAAAATGAC TTACGTGCCA
GGTGATTTAT TCTCGGTTAA TCCACTTACC GCTCAAAACG TGCCAGGACT GTTTGCCCGT
AATGAACGTG TTGTGGCTAT ATTTGAAACC GAAGTAGGTC CACTTGCAAT GGTACTGGTT
GGTGCAACCA TAGTTGCCAG TATTGAAACC ATATGGTCCG GCACGGTAAC GCCGCCAGGT
GGTAAACAAG TATTTAGCTG GGACTATCCA ACCACGGGTC CAGAAGCGGT CACCTTAGAA
AAAGGCGCTG AAATGGGTCG CTTTAAATTA GGCAGTACTG TGGTGATGTT ATTTGCCCAA
GATGCTATTG AAACATTTGC AGATGGTGTA GAACCAGGTG AAACAACTCG CATGGGTCAG
CCGTTCGCGA GACTCAAACA ACAATAA
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| Protein sequence | MDSIKIALQY MLPKHFLSRL VGKFAAAEAG AITTAVIKWF IKQYKIDMSE AQQPEPEAYK
TFNAFFTRAL KPELRPICQE SNMMAHPVDG AVSQCGPIEA GNIFQAKGHS YTSEALLGGN
KTDAARFDGG DFATIYLAPK DYHRLHMPIT GTLSKMTYVP GDLFSVNPLT AQNVPGLFAR
NERVVAIFET EVGPLAMVLV GATIVASIET IWSGTVTPPG GKQVFSWDYP TTGPEAVTLE
KGAEMGRFKL GSTVVMLFAQ DAIETFADGV EPGETTRMGQ PFARLKQQ
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