| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3294 |
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| Symbol | |
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| ID | 4280196 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3937719 |
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| End bp | 3938393 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638136112 |
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| Product | two component transcriptional regulator, winged helix family protein |
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| Protein accession | YP_751969 |
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| Protein GI | 114564455 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0118223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACTGT TACTCGTTGA AGATAACCCT TTACTCGTTG CCGAGCTTGA AAAACAACTC
AAGCAAGCTG GTTATATTAC GGATGTCACA GATAAAGCTA TTGAAGCCGA TTATTTGATG
AAAGAAACTG ATTATGACTG TGTCATTTTA GATATCGGAT TACCTGACGG AAATGGCTTG
TCATTAGTGA CTAAATGGCG TGAACGTGGC ATAAATACCC CGGTAATCAT GTTAACTGCC
CGAAGTCAGT GGCATGAAAA AGTTGAAGGC TTTAATGCTG GCGCAGATGA CTACTTAGGC
AAACCGTTTC ATGCGCAAGA ACTCCTCGCA CGTATTCAAG CACTCATCCA TAGAGCCCAT
GGGCGGGTTA ACTCGTCATC CAAGCAGCTA TGTTATGCAG GGGTTAATTT AGACGAAAAC
GAGCAAAAGG TGACTGTTGG CGAACACATA TATGAGCTGA CGTCGATGGA GTTTAGGTTA
CTGAAAATAT TCTTAATGTC ACCAAAGAAG CTTCTTTCGA AGCAACAGCT TACTGACAAG
CTTTATCAAT TTGATGATGA AAAAGAAAGT AACGTCGTTG AAGTTTATGT CACACACTTA
CGTAAAAAAC TCGGTAAAAC CGCTATCGAA ACTCGGCGTG GTCAGGGTTA TATCTTCCAT
GGCATTATTG AATGA
|
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| Protein sequence | MKLLLVEDNP LLVAELEKQL KQAGYITDVT DKAIEADYLM KETDYDCVIL DIGLPDGNGL
SLVTKWRERG INTPVIMLTA RSQWHEKVEG FNAGADDYLG KPFHAQELLA RIQALIHRAH
GRVNSSSKQL CYAGVNLDEN EQKVTVGEHI YELTSMEFRL LKIFLMSPKK LLSKQQLTDK
LYQFDDEKES NVVEVYVTHL RKKLGKTAIE TRRGQGYIFH GIIE
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