Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3291 |
Symbol | |
ID | 4280193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3935544 |
End bp | 3936323 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638136109 |
Product | TPR repeat-containing protein |
Protein accession | YP_751966 |
Protein GI | 114564452 |
COG category | [R] General function prediction only |
COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.107014 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAAAAAC TGAGTCAAAT CGGGTTTATT GCCTGTGTTG TTTTATTAAG TGGACTTAGT TCATCTGTAA AAGCGTTTGT TATCCCGCCC TCTATTGAGT CTCAGGCGGC GACTAAGTTG GTTCATATTC AGATTAAAGC CAAACAGGGC AATGCAGATG CACAATTTTT ATTGGGTTTA ATGAACCTTT CCGGACGATT TGTTACTCAA GATACTAAGC AAGGATTAAG CTGGGTTAAT CTTGCTGCAC AACAACACAA TATTAAGGCG CAACAAACAT TAGCTGATTT AGCCTTTGAC GGTAAATTAA TTCCGCGTGA TTTAGCGCTG GCAGAAAAAT GGTATCTGCA AATGGTCGCA CAAGGAGATA AGTGGGCTCA TTTTCGTTTA GGGTTTATTT ATTCTGCTGG TGGTGATGGT GTTGTGCGTA ATTGCGGCAA AGCAATGGAG CAGTTTAGTG CTGCGGGGGA TGCCGTTTCA ATGGGCAATA TTGCGTGGAT ATTAGCCACG TGCCCTGAGG CCGAATACCG AGATGGTTCG CGTGCAGTAT CAATGTCGTT AAAATTACTC GAACAAAATC AGAATGATCC AACGGTATTA GATAATCTTG CGGCCGCGTA TGCTGAGCTT GGTGATTTTT CTGCGGCAAT TGATACCCAG AAAAAAGCAA TTGATGCGTT AAAGGATAAT CCTGAGATTG TGCGCAGCGA TGAGTTTATT TTACGTTTGA AACAGTATCA GAATAATCAA GCTTATCGAG AAATTATCCC ACTGATGTAA
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Protein sequence | MKKLSQIGFI ACVVLLSGLS SSVKAFVIPP SIESQAATKL VHIQIKAKQG NADAQFLLGL MNLSGRFVTQ DTKQGLSWVN LAAQQHNIKA QQTLADLAFD GKLIPRDLAL AEKWYLQMVA QGDKWAHFRL GFIYSAGGDG VVRNCGKAME QFSAAGDAVS MGNIAWILAT CPEAEYRDGS RAVSMSLKLL EQNQNDPTVL DNLAAAYAEL GDFSAAIDTQ KKAIDALKDN PEIVRSDEFI LRLKQYQNNQ AYREIIPLM
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