Gene Sfri_3284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3284 
Symbol 
ID4280186 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3928215 
End bp3930125 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content43% 
IMG OID638136102 
ProductABC transporter related 
Protein accessionYP_751959 
Protein GI114564445 
COG category[R] General function prediction only 
COG ID[COG0488] ATPase components of ABC transporters with duplicated ATPase domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAACA TAAGCCAAGC TCAGTTAATT CGCGGCAGTA AAACCTTACT CGATGAAACC 
TCACTGACGA TTTATCCCGG ACACAAGGTT GGCCTTGTCG GCGCCAACGG TACAGGTAAA
TCATCATTGC TTGCCTTGAT TTTAGGTCAT TTACATCTAG ATAAAGGTGA GTTTAGTTTC
CCCTCAGGTT GGCAAGTTGC CTCTGTTGCG CAGGAAACTC CGGCATTAGA TGTGTCGGCA
CTTGAGTATG TCCTCGACGG TGACACCGAA TACCGAGATT TAGAAGCCCA ACTAGAGAAA
GCTCAAACCG ACAATAATGG TAATGCCATT GCGCTTATTC ATGGCAAAAT TGATGCAATT
GGCGGCTATG CCATTAAAGC GCGAGCAGGC GCGCTATTAG CAGGCTTAGG ATTTAAGGAT
GCAGACCAAA GTAACCCGGT AAAAAGCTTC TCTGGTGGTT GGCGTATGCG TCTCAACTTA
GCCCAAGCAC TCTTATGTCG TTCAGACTTA TTGTTACTCG ATGAGCCAAC CAACCACTTA
GACCTAGACA CCATGTATTG GTTAGAAGGT TGGATAAAAT CTTATCAAGG GACACTCATT
TTGATCAGCC ACGATCGTGA CTTTATCGAT GGCATTGTTG GTGAAATTGT TCATGTTGAA
AATCACAAAT TAAATTACTA CAAAGGTAAT TACTCTTCTT TTGAACGAGT GCGCGCTGAA
CGCATGGCCC AGCAGCAAGT AGCCTTTGAG CGTCAGCAAA AAGAGCGCTC GCATATGCAG
TCATTTGTTG ATCGGTTTCG CTATAAAGCC AGTAAAGCTA AACAAGCACA AAGCCGCTTG
AAAGCACTCG AGCGCATGGC CGAGTTGCTG CCATCGCAAG TAGACAATCC ATTTCAAATG
GCCTTTAGAG AACCAGAAGC GCTACCGAAC CCATTAGTGG TAATGGAAAA TGTCTCTATT
GGTTATGAAG ATAATACCAT CCTGAAACAG GTTGAGTTAA ATCTCGTTCC TGGTGCGCGT
ATTGGTTTGT TGGGTAGAAA TGGTGCCGGT AAATCAACGC TGATCAAACT GTTATCAGGC
CAACTACAAG CCAAAACGGG TAAGTATCAA CCTAACCCAG GATTAAATAT TGGTTATTTT
GCTCAGCATC AAGTTGAATT TTTAACGCTT GATGATTCTC CAATGCAACA CTTGGCTAGA
CTCGCGCCAG CAAGTGTTCG CGAACAAGAA TTACGTAACT TTTTAGGTGG GTTTGGCTTT
AATGGTGATA TGGCCTTATC GCCAGTACGG CCGTTTTCTG GCGGCGAAAA AGCCCGCCTA
GTATTAGCAT TAGTGGTTTG GCAGCGTCCA AATTTACTAT TACTCGATGA ACCGACCAAC
CATTTAGATT TAGAGATGCG TCACGCACTC ACCATGGCAT TGCAAACCTT TGAGGGCGCA
ATGGTTATCG TGTCACACGA TCGTCACCTA TTACGATTAA GTTGTAGTGA TTATTACTTA
GTTGACCAAG GTGTTGTAAC ACCTTTTGAT GGCGACTTAG ATGACTACCA TCAATGGTTG
CTAGATGCCG CTAAACTAGC ACAAGCCAAC AACAAAACAG ATGTAGGCGC TAGCAGCGAT
GCTGTTGATA AAAAACAGCA AAAAAGAATG GAAGCTGAAT TACGTCAGAA AGTATCGCCG
CTGAAAAAAC AACAAGTAAA GTTAGAAACT CAACAGCAAA AAATTAATGC CCGATTAGCC
GAATTAGAAA TTGAGTTAGC CGATGGCAGC TTATACGAAA CAGAGAACAA AGCTAAAATG
ACCAATGTTC TCAACGAACG GACTACGCTG ACTCAAGCTA TGGATGAAAG TGAAATGCAT
TGGTTAGAGA TTCAAGAGCA GATCGATATT TTTGAGCAAG ATTGCCTATA A
 
Protein sequence
MINISQAQLI RGSKTLLDET SLTIYPGHKV GLVGANGTGK SSLLALILGH LHLDKGEFSF 
PSGWQVASVA QETPALDVSA LEYVLDGDTE YRDLEAQLEK AQTDNNGNAI ALIHGKIDAI
GGYAIKARAG ALLAGLGFKD ADQSNPVKSF SGGWRMRLNL AQALLCRSDL LLLDEPTNHL
DLDTMYWLEG WIKSYQGTLI LISHDRDFID GIVGEIVHVE NHKLNYYKGN YSSFERVRAE
RMAQQQVAFE RQQKERSHMQ SFVDRFRYKA SKAKQAQSRL KALERMAELL PSQVDNPFQM
AFREPEALPN PLVVMENVSI GYEDNTILKQ VELNLVPGAR IGLLGRNGAG KSTLIKLLSG
QLQAKTGKYQ PNPGLNIGYF AQHQVEFLTL DDSPMQHLAR LAPASVREQE LRNFLGGFGF
NGDMALSPVR PFSGGEKARL VLALVVWQRP NLLLLDEPTN HLDLEMRHAL TMALQTFEGA
MVIVSHDRHL LRLSCSDYYL VDQGVVTPFD GDLDDYHQWL LDAAKLAQAN NKTDVGASSD
AVDKKQQKRM EAELRQKVSP LKKQQVKLET QQQKINARLA ELEIELADGS LYETENKAKM
TNVLNERTTL TQAMDESEMH WLEIQEQIDI FEQDCL