| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3280 |
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| Symbol | panB |
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| ID | 4280182 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3924905 |
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| End bp | 3925699 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638136098 |
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| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
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| Protein accession | YP_751955 |
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| Protein GI | 114564441 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
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| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.554119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAAAAG TCACCAGTTC GACCCTGATC AAGTTCAAAC AAGAAGGTAA AAAGTTCACC
GCATTAACGG CTTATGACGC TAGTTTTGCC GGCGCATTTG ACAGTGAAGG TGTGGATGTA
CTTTTAGTGG GTGATTCACT CGGTATGGTG CTTCAAGGCC ATAACGATAC CCTACCAGTA
ACCATTGCCG ATATTGCTTA CCATACCGCT TGTGTTAAAC GTGGTGTTGC GCGCGCATTA
CTCATCGCAG ACATGCCGTT TATGAGTTAT AGCACCCCAG AGCAAACCAT GAATAACGCG
GCAATATTAA TGCAGGCAGG TGCCAGCATG GTCAAATTAG AAGGTGGACA TTGGCTACTT
GAAAGCGTAA AAATGTTAAC CGAACGTGGT ATTCCAGTTT GTGCTCACCT AGGATTAACA
CCACAGTCGG TGAACGTTTT TGGCGGATTT AAAGTGCAAG GTCGCGATGC CGATAACGCG
CAACGCATTC TAGATGAAGC TAAAGCATTG CAAGCTGCTG GTGCGCAATT ATTAGTGGTT
GAGTGTATTC CAGCCCCACT GGCTAAAGCC ATTACTGAAG CACTAACCAT TCCAGTTATT
GGTATCGGCG CTGGTGCTGA CACCGATGGT CAAATACTTG TTATGCATGA TGTGTTAGGC
ATTTCGAGTG GCTACATTCC CCGTTTTTCA AAAAACTACC TCAAACAAAC CGGCGAAATT
CGCTCGGCTA TCAGAGCCTA TATTGATGAA GTTGCTAACG GCACATTCCC TGCTGAAGAA
CATACCTTTA ATTAG
|
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| Protein sequence | MSKVTSSTLI KFKQEGKKFT ALTAYDASFA GAFDSEGVDV LLVGDSLGMV LQGHNDTLPV
TIADIAYHTA CVKRGVARAL LIADMPFMSY STPEQTMNNA AILMQAGASM VKLEGGHWLL
ESVKMLTERG IPVCAHLGLT PQSVNVFGGF KVQGRDADNA QRILDEAKAL QAAGAQLLVV
ECIPAPLAKA ITEALTIPVI GIGAGADTDG QILVMHDVLG ISSGYIPRFS KNYLKQTGEI
RSAIRAYIDE VANGTFPAEE HTFN
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