Gene Sfri_3279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3279 
Symbol 
ID4280181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp3924351 
End bp3924836 
Gene Length486 bp 
Protein Length161 aa 
Translation table11 
GC content43% 
IMG OID638136097 
Product2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 
Protein accessionYP_751954 
Protein GI114564440 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0801] 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 
TIGRFAM ID[TIGR01498] 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.264754 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGTTC AAGTTTATGT CGCCATAGGC GCTAATTTAG CCGAACCAAT ACAACAACTC 
GATGTTGCGG TATTGGCGCT AAAAGCATTG GCAATAAACA ACACTTTTAC AGTGTCAGCT 
TATTATGGTT CCAAGCCCAT GGGTGATGTT ATTCAGCCAG ATTATGTCAA TGCTGTCGCG 
GGATTTCAAA CCTCGCTAAA GCCCATTGAG TTACTCGATG CTTTACAAGA GATTGAGCAT 
CAACAAGGGC GTGTACGGCT TGAGCATTGG GGACCTCGTA CCTTAGATTT AGATTTGTTA 
CTCTATGGTC AACAACACAT CAACGAATCT CGTCTTTGTG TGCCTCATTA CGGCATGAAG 
CAACGCAGTT TTGTGTTAGT TCCATTAGCA GACATTGCAC CAGCGCTAAT ATTACCTTGT 
AATACAAGCC TTGAAAGCCT TATTAGTGTG GCAATGCGTG ATGAATTGCA AAAGCTTATC 
GATTAA
 
Protein sequence
MAVQVYVAIG ANLAEPIQQL DVAVLALKAL AINNTFTVSA YYGSKPMGDV IQPDYVNAVA 
GFQTSLKPIE LLDALQEIEH QQGRVRLEHW GPRTLDLDLL LYGQQHINES RLCVPHYGMK 
QRSFVLVPLA DIAPALILPC NTSLESLISV AMRDELQKLI D