| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3270 |
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| Symbol | |
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| ID | 4280172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3910920 |
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| End bp | 3913220 |
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| Gene Length | 2301 bp |
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| Protein Length | 766 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136088 |
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| Product | penicillin-binding protein 1B |
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| Protein accession | YP_751945 |
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| Protein GI | 114564431 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
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| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTAAAA AAACCAAAAA GTCTTCAGCC AACACAAAAA AAAGTGGCTC ATCTTGGTGG
CAAAAACTGT GGTCGCTCAC ATGGAAATTA TCAATCGTTG GTATCGCTGT TGTGAGCTTT
TATGCGATTT ATTTAGACCA AATTATTGCG CAGAAATTTG AAGGCCAAAA GTGGCATTTA
CCTGCCCAGG TGTTTAGTCG TTCAATGGCA TTATATCCAG GGGCTGCGGT AAACCATCCG
CAGTTAATGG CTGAGCTTAA GTTACTCGGT TATCGTAAAG TGTCTAATCC ACGACAAGTT
GGCGAATTTT CTGCTTCAAG TACTCGTATC GAATTATGGC GTCGACCATT TTTGCATCCC
GAAGGCAATC AAGCCGAGCA ACGAGTGATG ATTAGTTTTG ACTCTGAAGG CGTTAGCTCA
GTTAAGCGGA TGTCAGATAA ACGGGAATTA GCGGTATTTC ATTTAGAACC GGTATTACTT
GACCGTATTA TTACCGGCGA TGGCGAAGAC CGTTTATTTG TGCGAACGCC AGAGATGCCT
TCGATGATCA TCGATGCACT TATTTTGGTT GAAGACCGCA GCTTTTATGA TCACTTTGGG
GTTAACCCAT TGGCGATTGC ACGTGCTGCC GTAGTCAACA TTACTGCTGG TCGGACGGTA
CAAGGTGGTT CAACCTTAAC CCAGCAGTTA GCCAAAAACT TCTTTTTAAG CAGTGAACGT
TCAATTGTGC GTAAAGTGCG TGAAGCGATA ATGGCATTGA TTATCGATTT TCGTTATAGC
AAAGATGAAA TTCTAGAAGC TTATCTCAAT GAAGTGTACA TGGGCCAAGA CAAGGCTCGT
GGTGTGCATG GTATGGGGTT AGCTTCACAA TTCTACTTTG GTCGCCCTAT TGGTGAGCTG
ACCGTGTCGC AGCAAGCCTT TTTAGTTGCG GTCATTAAAG GACCTTCTTA TTACAACCCG
TGGCGTTACC CTGAACGAGC TCAAGAGCGC CGTGATTTAG TGTTACGTCT GCTAATGGAA
AGCGATAAAT TAACCGTTGC CCAATATAAA GCAGCAGCAG AGTCGCCAAT CGGTTTACGC
AGCGCTAAAA AATCGGTACA TCAGAAGTTA CCAGCGTTTT TTGCTGTGGT TAAACAAGAG
TTACGCGACC GTTATGGTGA TTCGTTACTG AAGCAGTCGG GCGTAAAAGT GTATACCACG
CTCGATCCTA TGGCCCAAGA AGCCGCAGAA AAAGCCGTGT TGTCTACCAT GGCATCACTG
GATAAACGGG CTAAAAACGT TCAAGTCGGC ATGGTTGTTA CTGACAAATA TACCGGCGGC
ATTGCTGCGA TGGTGGGTGA TAAACAACCG AGTTATGAAG GGTTTAATCG CGCGGTTGAG
ATTAGACGTC CCATTGGGTC GTTAATCAAA CCATTCGTGT ATGCCAGTGC ATTACGCCAA
GCAGATAGAT TTACTCTAGC CACTCCCGTA GAGGACAAAC CGATCACCCT TAAAAATGAG
CAAGGGAAAA CATGGTCACC TAAAAACGTT GATAAAAAGT TCAGTGGTCA AGTGCCTTTG
TTAAACGCAT TTAAAGATTC AATGAACGTT CCAACGGTTA ATGTTGGTTT GGCTGTTGGC
GTTGAAAAGG TTGCTGCTAC ATTGAAAAAA TCGGGCTGGG AGGATGATAT ATCCCCTTAT
CCATCGATGT TGTTGGGGGC GGTGAATGGC TCTCCATTAA TGGTGGCTCA AGTTTATCAA
ACCATTGCTG ATGAAGGCCG CTATCGTAAG TTATCATCAA TTACCGCGGT ATTAGACAGT
CAAAACCAAG CGTTGGAAGT GACTCGTGTT CCATCGTCGA TGGCGATCGA TCCGGCGACC
GATTACTTAG TTCAATATGC AATGAACCAG GTAGTACGTA ATGGTACGGC TAAGCGTTTA
GGCGCAGCAT TTCCTGGAGT TCGTTTAGCG GGTAAAACCG GCACTAGTAA TGATAGTCGT
GACTCGTGGT TTGCTGGATT TGATGAACGT AACGTAGCGG CTATTTGGGT TGGTCAAGAC
GATAACAGTA AAACGGGCCT GTATGGCAGC AGCGGCGCAA TGGCAGTGTA TCAAGCCTTT
TTACATGAAC GTCCACCGCT CAGTTTACGT ATGATGCCGG TTAATGGCGT AATTAATGGC
TATTTTGATC GTACAACGGG TGTGGCTAAG AAAGGTAATT GTGACAATAT TATCGGTCTA
CCAGCATTAG ACGCAAGCTA TCATCCGGTA GCTAATTGTG GTGAGTCATT ATCTTGGTGG
CAGAAGCTGG TGGGAGAGTA A
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| Protein sequence | MSKKTKKSSA NTKKSGSSWW QKLWSLTWKL SIVGIAVVSF YAIYLDQIIA QKFEGQKWHL
PAQVFSRSMA LYPGAAVNHP QLMAELKLLG YRKVSNPRQV GEFSASSTRI ELWRRPFLHP
EGNQAEQRVM ISFDSEGVSS VKRMSDKREL AVFHLEPVLL DRIITGDGED RLFVRTPEMP
SMIIDALILV EDRSFYDHFG VNPLAIARAA VVNITAGRTV QGGSTLTQQL AKNFFLSSER
SIVRKVREAI MALIIDFRYS KDEILEAYLN EVYMGQDKAR GVHGMGLASQ FYFGRPIGEL
TVSQQAFLVA VIKGPSYYNP WRYPERAQER RDLVLRLLME SDKLTVAQYK AAAESPIGLR
SAKKSVHQKL PAFFAVVKQE LRDRYGDSLL KQSGVKVYTT LDPMAQEAAE KAVLSTMASL
DKRAKNVQVG MVVTDKYTGG IAAMVGDKQP SYEGFNRAVE IRRPIGSLIK PFVYASALRQ
ADRFTLATPV EDKPITLKNE QGKTWSPKNV DKKFSGQVPL LNAFKDSMNV PTVNVGLAVG
VEKVAATLKK SGWEDDISPY PSMLLGAVNG SPLMVAQVYQ TIADEGRYRK LSSITAVLDS
QNQALEVTRV PSSMAIDPAT DYLVQYAMNQ VVRNGTAKRL GAAFPGVRLA GKTGTSNDSR
DSWFAGFDER NVAAIWVGQD DNSKTGLYGS SGAMAVYQAF LHERPPLSLR MMPVNGVING
YFDRTTGVAK KGNCDNIIGL PALDASYHPV ANCGESLSWW QKLVGE
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