Gene Sfri_3243 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3243 
Symbol 
ID4280145 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3880055 
End bp3880660 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content39% 
IMG OID638136061 
Producthypothetical protein 
Protein accessionYP_751918 
Protein GI114564404 
COG category[R] General function prediction only 
COG ID[COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) 
TIGRFAM ID[TIGR02722] uncharacterized proteobacterial lipoprotein 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.126868 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATTTA CTATGAAAAA TTTGAAACTG ATATTTGTAT TAGCTGCAGT AATGGGGCTG 
AGCGCCTGTC AATCTAAAGT AGAGTATGGT GACGCGACAG AAGTCGAAAC CGTTAACGAA
AACTTCGGTT CAACTGATCT GCAAGTCATC GCCGCAAAAA TGGTCGACAG CATGATGGCA
TTCCCACCAG TAGTGGTAAT GACACAGAGC AACCGCCCGA TTGTATTTGT GGACAAAATT
AAAAATAAAA CTTCTGAGCA TATTGATACA GAATCAGTGA CCGACACCAT TAGCAATAAG
CTATTACGCT CTGGTAAGTT CCGTTTTATT GATATGACTA AGGTTGATAC TGTACGTAAA
CAACTTGATT ATCAAAACAA TGCTGGCATG GTAGACCCAT CTACGGCAAT TAAATTTGGC
CGTCAAATTG GTGCGCAATA TATGCTTTAT GGCAACTTAT CCAGCATCGT TAAACAAGAT
GGCAGCACCA AAGATGTTTA CTACAAAATG ACCATGCGGT TAATGGATCT TGAAACTGGC
CTAATTGAAT GGTCAGATGA AAAAGAAATC CGTAAAATGA AATCAAAGTC TTTTTTAGGC
TTATAA
 
Protein sequence
MEFTMKNLKL IFVLAAVMGL SACQSKVEYG DATEVETVNE NFGSTDLQVI AAKMVDSMMA 
FPPVVVMTQS NRPIVFVDKI KNKTSEHIDT ESVTDTISNK LLRSGKFRFI DMTKVDTVRK
QLDYQNNAGM VDPSTAIKFG RQIGAQYMLY GNLSSIVKQD GSTKDVYYKM TMRLMDLETG
LIEWSDEKEI RKMKSKSFLG L