Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3243 |
Symbol | |
ID | 4280145 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 3880055 |
End bp | 3880660 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638136061 |
Product | hypothetical protein |
Protein accession | YP_751918 |
Protein GI | 114564404 |
COG category | [R] General function prediction only |
COG ID | [COG3417] Collagen-binding surface adhesin SpaP (antigen I/II family) |
TIGRFAM ID | [TIGR02722] uncharacterized proteobacterial lipoprotein |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.126868 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAATTTA CTATGAAAAA TTTGAAACTG ATATTTGTAT TAGCTGCAGT AATGGGGCTG AGCGCCTGTC AATCTAAAGT AGAGTATGGT GACGCGACAG AAGTCGAAAC CGTTAACGAA AACTTCGGTT CAACTGATCT GCAAGTCATC GCCGCAAAAA TGGTCGACAG CATGATGGCA TTCCCACCAG TAGTGGTAAT GACACAGAGC AACCGCCCGA TTGTATTTGT GGACAAAATT AAAAATAAAA CTTCTGAGCA TATTGATACA GAATCAGTGA CCGACACCAT TAGCAATAAG CTATTACGCT CTGGTAAGTT CCGTTTTATT GATATGACTA AGGTTGATAC TGTACGTAAA CAACTTGATT ATCAAAACAA TGCTGGCATG GTAGACCCAT CTACGGCAAT TAAATTTGGC CGTCAAATTG GTGCGCAATA TATGCTTTAT GGCAACTTAT CCAGCATCGT TAAACAAGAT GGCAGCACCA AAGATGTTTA CTACAAAATG ACCATGCGGT TAATGGATCT TGAAACTGGC CTAATTGAAT GGTCAGATGA AAAAGAAATC CGTAAAATGA AATCAAAGTC TTTTTTAGGC TTATAA
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Protein sequence | MEFTMKNLKL IFVLAAVMGL SACQSKVEYG DATEVETVNE NFGSTDLQVI AAKMVDSMMA FPPVVVMTQS NRPIVFVDKI KNKTSEHIDT ESVTDTISNK LLRSGKFRFI DMTKVDTVRK QLDYQNNAGM VDPSTAIKFG RQIGAQYMLY GNLSSIVKQD GSTKDVYYKM TMRLMDLETG LIEWSDEKEI RKMKSKSFLG L
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