| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3106 |
|---|
| Symbol | |
|---|
| ID | 4280009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3717418 |
|---|
| End bp | 3718704 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638135925 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_751782 |
|---|
| Protein GI | 114564268 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAG TCCCCCTTAA ATTGAAGCAC CTACGTTGGC TTGTTGTCAG CTTAGTGGCA
CTCGCTACCG TCATTAACTA CATCGACCGA TCTGCCCTTG CCATTATGTG GCCAGGCATT
GCAGAAGATT TAGGTTTAGA TAAAAGTGAT TATGCCAACA TTATTACCGT GTTCATGATC
TCATACGCAA TTGGTCAGTC TCTATTTGGT AAGATATTTG ATGCTATTGG CACGCGCTTA
GGTTTTTTAT TATCCATTGT AGTGTGGTCG GTCTCAATCG CCCTGCATGC TGTTGCAGCA
AGCGTTACCT CATTTGCTAT TTTTAGAGCT ATGCTTGGGC TAGGTGAAGC GGGTAACTGG
CCTGGTGCAA CCAAAGCGAA TGCTGAATGG TTTCCGATTA AAGAACGCGC CCTAGCACAA
GGTATCTTCA ATGCTGGTGC GTCTTTAGGC TCGATTATCG CCCCACCATT GATTGCTTTT
TTGTATGCCT TTTTAGGATG GCAGGCAACC TTTATCGTCA TTGGTAGTTT GGGTATTCTT
TGGATTTTAC CTTGGTTGAT TGTTTATAAA TCATCACCAG ACTCACACCC ATGGATCACT
GAAGAAGAAC GCCAACATAT CTTAACCGGA CAGCAATGCA CTTCAGAAAA ACAACAGGAC
AAAGAATACG TGCCCACTAT GGGACAGTTA TTACGCCACC GTCAAACTTG GGGAGTGATA
GCAGCACGTT TCTTTATCGA CCCAATCTGG TGGTTATTTG TTGCTTGGCT ACCATTGTAT
TTAAATGAAA AATTTGGCTT TGATGTTAAA CAAATTGGCG CGTTTGCTTG GTTACCTTAT
GTAGGTGCTG CCATTGGTGC ATTATTTGGT GGTTGGTTTA GCGGCCACTT GATGAGCAGA
GGCTGGTCGG TGAATAAAGC CCGTCGTAGT GCAATTGTCT TAGGTTGTAT GGTTATGCTG
CCAGCACTGT TACTGACATC TCTTGCTGCA ACGCCTTGGA TGGCAATGGG CCTTATAGCG
CTTATCTTAT TTGGTTTCCA AACGGCTATT GGCAACGTTC AAACGTTACC AAGTGATTAC
TTCTCCGGTA AAACAGTCGG TACCTTAGCT GGTATTAGTG GTACATCGGC AGTACTAAGT
GTGATTATCA CCATCCAATT AGTGCCAATG ATGACCAAAG GCGGTGACTA TACGCCATTC
TTTATTTTAG GTGCTGCGTT AGTTCCACTA GCATTAATTT CGTTGTGGTT AGGCGGAAAA
ATTGAACCGG TAAAAAGGAA GGCATAA
|
|---|
| Protein sequence | MKKVPLKLKH LRWLVVSLVA LATVINYIDR SALAIMWPGI AEDLGLDKSD YANIITVFMI
SYAIGQSLFG KIFDAIGTRL GFLLSIVVWS VSIALHAVAA SVTSFAIFRA MLGLGEAGNW
PGATKANAEW FPIKERALAQ GIFNAGASLG SIIAPPLIAF LYAFLGWQAT FIVIGSLGIL
WILPWLIVYK SSPDSHPWIT EEERQHILTG QQCTSEKQQD KEYVPTMGQL LRHRQTWGVI
AARFFIDPIW WLFVAWLPLY LNEKFGFDVK QIGAFAWLPY VGAAIGALFG GWFSGHLMSR
GWSVNKARRS AIVLGCMVML PALLLTSLAA TPWMAMGLIA LILFGFQTAI GNVQTLPSDY
FSGKTVGTLA GISGTSAVLS VIITIQLVPM MTKGGDYTPF FILGAALVPL ALISLWLGGK
IEPVKRKA
|
|---|
| |