| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3090 |
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| Symbol | |
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| ID | 4279993 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3696263 |
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| End bp | 3697234 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135909 |
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| Product | trans-hexaprenyltranstransferase |
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| Protein accession | YP_751766 |
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| Protein GI | 114564252 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATTTAA ACGCCATTCG TCAACTGGCT GACACTGATA TGCAAGCAGT CAATCAGCTG
ATATACAAAC AACTTGAATC TGATGTAGCC CTAATTAATC AATTAGGCTT TTACATTATC
AATGGCGGTG GTAAGCGTTT ACGTCCGTTA TTATCAGTAT TAGCCGCACG AACCGTTGAC
TATCAAGGCG AGCATCACCT TAAACTCGCG GCGATCATCG AGTTTATCCA TACTGCGTCT
TTGTTACATG ATGATGTTGT TGATGAGTCG ACATTGCGTC GCGGCCGTGA GACCGCCAAT
GCCTTATTTG GTAATAGCGC TAGCGTGCTC GTAGGTGACT TTTTATATAC TCGTTCATTT
CAAATGATGA CCGAGCTCGA AAACATGAAA GTGCTGCAAG TCCTTGCTCA TACCACTAAC
GTACTTGCAG AAGGTGAAGT GTTACAGCTA ATGAACTGTA ATGACCCTGA TACCACTGAA
GCTAACTACA TGCGGGTTAT CTACTGTAAA ACTGCAAAAT TGTTTGAAGC GGCAACTCAG
TTAGCCGGCG TATTAGCCAA TGTGAGCCCA GAGCAAGAGC AAGCATTAGC TGATTACGGT
AAATATCTCG GCACAGCTTT TCAATTAACT GATGATTTAC TGGATTACAC AGCTAACGCT
GACGAACTAG GCAAAAACAT TGGTGATGAC CTTGCTGAAG GCAAGCCAAC ATTACCGCTA
ATTTATGCCA TGGAAAACGG TTCTGACACA GCTAAAAAAC TGATTCGAGA TGCTATTGAG
CAAAGTGATG GCACCAAAGC GATTGATGAA ATTCTAGTAG CATTAGAGGA GTCTGGTGCA
TTAGTTTATA CTCAGGAGAA AGCTCAAGCA GAAGCACAGA AGGCCATCGA TGCACTCACT
GTTTTTCCTG ACAGCGACTA CAAGCAAGCA CTCATTTCGT TAGCTCATCT GTCGGTTAAT
CGCAGCAGTT AA
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| Protein sequence | MDLNAIRQLA DTDMQAVNQL IYKQLESDVA LINQLGFYII NGGGKRLRPL LSVLAARTVD
YQGEHHLKLA AIIEFIHTAS LLHDDVVDES TLRRGRETAN ALFGNSASVL VGDFLYTRSF
QMMTELENMK VLQVLAHTTN VLAEGEVLQL MNCNDPDTTE ANYMRVIYCK TAKLFEAATQ
LAGVLANVSP EQEQALADYG KYLGTAFQLT DDLLDYTANA DELGKNIGDD LAEGKPTLPL
IYAMENGSDT AKKLIRDAIE QSDGTKAIDE ILVALEESGA LVYTQEKAQA EAQKAIDALT
VFPDSDYKQA LISLAHLSVN RSS
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