Gene Sfri_3062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3062 
Symbol 
ID4279966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3670159 
End bp3670863 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content47% 
IMG OID638135882 
Producttwo component transcriptional regulator, winged helix family protein 
Protein accessionYP_751739 
Protein GI114564225 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGTGA AAAAGCACAT ATTAGTGGTA GAAGACGACA CTTCTTTGGC TGAGTGGATC 
AGTGATTATT TACTGGATCA TGACTATGAG GTAACTGTTG CCAGTCAAGG TGATTATGCC
TTAGACATGA TCGCTGAAGA ACTGCCGGAT CTGGTCTTAC TGGATGTAAT GATCCCAGTG
AAAAACGGTT TCGATGTTTG CAAAGAGGCG AGGGGTTTTT ATTCAGGGCC TATTTTATTT
ATGACCGCCT GTGTTGAAGA TGGGGATGAA ATTCAGGGGT TGGAAATGGG CGCCGATGAT
TACCTCACCA AACCTATTCG GCCGCAAGTC TTGCTGGCAC GGATTAAAGC GTTACTGCGC
CGCGCCAATG ATGAAGAGCC TAAACAACAG CTGGTATTTG GTGCCCTAGT GCTTAATGCT
ACCGCTAAAA CGGTCACGGT TCATCAGCAA GCATTGGGAC TTAATGACAA TGAATTCGAT
GTCTTATGGC TGCTGGCATT GCAGGCGGGC AAAGTGGTGA GCCGTATTGA CCTAGTGTCA
CAGCTTAGGG GCATAGAATA TGATGGCCTA GATCGCTCCG TGGATATCCG CGTATCTCGC
TTACGCAAAA AGCTTCAAGA AGCTCAAGAC CAGCCCTATA AAGTCAAAAC CATTCGTGGC
AAAGGCTATT TGTTTTGCCG CGATGATGCA GCGACTACAT CATGA
 
Protein sequence
MAVKKHILVV EDDTSLAEWI SDYLLDHDYE VTVASQGDYA LDMIAEELPD LVLLDVMIPV 
KNGFDVCKEA RGFYSGPILF MTACVEDGDE IQGLEMGADD YLTKPIRPQV LLARIKALLR
RANDEEPKQQ LVFGALVLNA TAKTVTVHQQ ALGLNDNEFD VLWLLALQAG KVVSRIDLVS
QLRGIEYDGL DRSVDIRVSR LRKKLQEAQD QPYKVKTIRG KGYLFCRDDA ATTS