Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3062 |
Symbol | |
ID | 4279966 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3670159 |
End bp | 3670863 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638135882 |
Product | two component transcriptional regulator, winged helix family protein |
Protein accession | YP_751739 |
Protein GI | 114564225 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCAGTGA AAAAGCACAT ATTAGTGGTA GAAGACGACA CTTCTTTGGC TGAGTGGATC AGTGATTATT TACTGGATCA TGACTATGAG GTAACTGTTG CCAGTCAAGG TGATTATGCC TTAGACATGA TCGCTGAAGA ACTGCCGGAT CTGGTCTTAC TGGATGTAAT GATCCCAGTG AAAAACGGTT TCGATGTTTG CAAAGAGGCG AGGGGTTTTT ATTCAGGGCC TATTTTATTT ATGACCGCCT GTGTTGAAGA TGGGGATGAA ATTCAGGGGT TGGAAATGGG CGCCGATGAT TACCTCACCA AACCTATTCG GCCGCAAGTC TTGCTGGCAC GGATTAAAGC GTTACTGCGC CGCGCCAATG ATGAAGAGCC TAAACAACAG CTGGTATTTG GTGCCCTAGT GCTTAATGCT ACCGCTAAAA CGGTCACGGT TCATCAGCAA GCATTGGGAC TTAATGACAA TGAATTCGAT GTCTTATGGC TGCTGGCATT GCAGGCGGGC AAAGTGGTGA GCCGTATTGA CCTAGTGTCA CAGCTTAGGG GCATAGAATA TGATGGCCTA GATCGCTCCG TGGATATCCG CGTATCTCGC TTACGCAAAA AGCTTCAAGA AGCTCAAGAC CAGCCCTATA AAGTCAAAAC CATTCGTGGC AAAGGCTATT TGTTTTGCCG CGATGATGCA GCGACTACAT CATGA
|
Protein sequence | MAVKKHILVV EDDTSLAEWI SDYLLDHDYE VTVASQGDYA LDMIAEELPD LVLLDVMIPV KNGFDVCKEA RGFYSGPILF MTACVEDGDE IQGLEMGADD YLTKPIRPQV LLARIKALLR RANDEEPKQQ LVFGALVLNA TAKTVTVHQQ ALGLNDNEFD VLWLLALQAG KVVSRIDLVS QLRGIEYDGL DRSVDIRVSR LRKKLQEAQD QPYKVKTIRG KGYLFCRDDA ATTS
|
| |