| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3003 |
|---|
| Symbol | |
|---|
| ID | 4279907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3606150 |
|---|
| End bp | 3607424 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638135823 |
|---|
| Product | 4-aminobutyrate aminotransferase |
|---|
| Protein accession | YP_751680 |
|---|
| Protein GI | 114564166 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0160] 4-aminobutyrate aminotransferase and related aminotransferases |
|---|
| TIGRFAM ID | [TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.48796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA CAAATGATGG ATTAATGGCT CGTCGCCAAG CGGCAGTGGC TCAAGGTGTA
GGGCAAATTC ACCCAATTTT TACTGAACGT GCTGAAAACG CCACAGTATG GGATGTTGAA
GGTCGTGAAT ATATCGACTT TGCCGGTGGT ATTGCGGTAC TCAATACTGG TCATTTACAC
CCTAAAGTTA AAGCGGCTGT GGCAGCGCAG CTAGATGCAT TTTCGCATAC ATGTTTTATG
GTGTTGGGTT ATGAAAGTTA CATTGCGGTA TGTGAAAAAC TTAACCATTT AGTGCCAGGC
GATTTTGCTA AAAAAACCGC CTTATTTACC AGTGGTTCTG AAGCGGTTGA AAACGCAGTT
AAAGTAGCCC GTGCTTATAC AAAACGAGCA GGCGTTATCG CATTTACCTC TGGCTATCAT
GGTCGAACCA TTGCTGCGCT AGCATTAACT GGCAAAGTAG CACCGTACAG TAAAGGCATG
GGCTTAATGT CTGCCAACGT GTTCCGAGCT GAATTTCCTT GTGAGATGCA TGGCGTGTCT
GAAGATGATG CTATGGCATC AATTGAACGT ATTTTTAAGA ATGATGCCGA GCCTGCAGAT
ATTGCCGCAA TTATATTAGA ACCTGTGCAA GGCGAGGGTG GCTTTTATGC CGTTACGCCA
TCATTTATGA AGCGCTTACG TGAATTGTGC GACAACCATG GCATTGTGTT AATTGCGGAC
GAAGTTCAAA CCGGCGCTGG TCGTACTGGT ACTTTCTTTG CGATGGAGCA AATGGGTGTA
GCCGCAGACA TTACTACCTT TGCCAAGTCT ATAGCCGGTG GTTTTCCACT GTCGGGTATT
ACCGGTAAAG CAGAAGTCAT GGATGCAGTA ACCGCAGGTG GTTTAGGTGG CACTTATGGT
GGCAGCCCGA TTGCTTGTGC TGCTGCGTTA GCGGTTATTG AAGTGTTTGA AGAAGAGCAG
TTATTAACTC GCGCTAATGA AGTCGGTAAT CGGCTTAAAT CGGCATTAAC GGATATGCAG
GCTAAGTATT CGCAAATTGC TGATGTACGT GGATTGGGTG CAATGATCGC CATAGAGTTA
ATGGAAGATG GTGAACCTGC TCCGCAGTAC AGCGGTAAGA TTTTAACTGA AGCACGTAAC
CGCGGACTGA TTTTATTGTC TTGTGGCACC TACGGCAACG TGATTAGAGT GCTGGTGCCA
TTAACTGCGC CAGATGCACA AATTGATACT GGTCTTGCGA TTATGGATTC GACATTTCAG
GCAGTGTTTA AATAA
|
|---|
| Protein sequence | MTKTNDGLMA RRQAAVAQGV GQIHPIFTER AENATVWDVE GREYIDFAGG IAVLNTGHLH
PKVKAAVAAQ LDAFSHTCFM VLGYESYIAV CEKLNHLVPG DFAKKTALFT SGSEAVENAV
KVARAYTKRA GVIAFTSGYH GRTIAALALT GKVAPYSKGM GLMSANVFRA EFPCEMHGVS
EDDAMASIER IFKNDAEPAD IAAIILEPVQ GEGGFYAVTP SFMKRLRELC DNHGIVLIAD
EVQTGAGRTG TFFAMEQMGV AADITTFAKS IAGGFPLSGI TGKAEVMDAV TAGGLGGTYG
GSPIACAAAL AVIEVFEEEQ LLTRANEVGN RLKSALTDMQ AKYSQIADVR GLGAMIAIEL
MEDGEPAPQY SGKILTEARN RGLILLSCGT YGNVIRVLVP LTAPDAQIDT GLAIMDSTFQ
AVFK
|
|---|
| |