| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3001 |
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| Symbol | |
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| ID | 4279905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3603144 |
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| End bp | 3603803 |
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| Gene Length | 660 bp |
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| Protein Length | 219 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135821 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_751678 |
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| Protein GI | 114564164 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGAAT TTATTGCTCC ACCTTGCGAT GGCAACATTG AGGTTTTATA CCAAGATGAA
CATTTACTGT TGATCAATAA GCCTACAGGG TTATTGAGTC TTTCGGGGAA GAATCCATTG
AATAAGGATT CGGTACACCA TCGTTTAGTA CAAGATTACC CCTCGGCAAC GTTAGTGCAC
CGTCTCGATT TCGGCACGTC GGGCATTATG TTGGTAGCGC TAAACAAAGT GATTAATGGT
TTATTGACTA AACAATTTCA GCTACGAACT GTCTCAAAAA CCTATACCGC AGTGTTATAC
GGTGATTTAG TTGAGCAACA TGGTGATATT GAATTACCGA TCGCCAAAGA TAGCGATAAT
TTCCCGTTAA TGAAAATTTG CCAACAAACT GGCAAGCCAG CGCACAGTCA ATATCAAGTG
ATTGAACGGC ATCAACAGAG GCTATCAACG CGGGTGACCT TTACCCCTAT TACAGGCCGA
ACTCATCAGC TACGCATACA CAGCCTGCAA ATAGGCCATC CGATTTTAGG TTGTGACTTA
TACCGAAATG AGTATTCGCA AGCGATGTCG GACCGATTAA TGCTGCATGC CACTTCATTA
TCGTTCACCC ATCCTGTAAC AGAACAACGA ATTGATTATG TTTGCCCAAG CCCATTTTAA
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| Protein sequence | MAEFIAPPCD GNIEVLYQDE HLLLINKPTG LLSLSGKNPL NKDSVHHRLV QDYPSATLVH
RLDFGTSGIM LVALNKVING LLTKQFQLRT VSKTYTAVLY GDLVEQHGDI ELPIAKDSDN
FPLMKICQQT GKPAHSQYQV IERHQQRLST RVTFTPITGR THQLRIHSLQ IGHPILGCDL
YRNEYSQAMS DRLMLHATSL SFTHPVTEQR IDYVCPSPF
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