Gene Sfri_2919 details

Gene Information

• Locus tag: Sfri_2919
• Symbol: rimM
• ID: 4279824
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 3508771
• End bp: 3509301
• Gene Length: 531 bp
• Protein Length: 176 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638135739
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_751597
• Protein GI: 114564083
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.000569736
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAGTA ACCAAGAGCT AGTTGTACTG GGTAAGTTAG GTTCCAGTCA TGGTATTAAA 
GGTTGGCTAA AAATCACTTC CTATACCGAT TCTGTTGAAG GTATTTTCGA TTATTCGCCT 
TGGCTTATAA AAGAACAAGG CGTTTGGCGT GAAGTTAAGG TCGCTCAGTG GCGTTTTCAA 
GGTAAAGCTG TAGTGGCTGA ACTAGAAGGT GTCGCTACCA GAGAACATGC GCAAATGCTC 
ACAAATTGTG AAATTGCGAT CATGCCTGAG CAAATGAAAG ATTTGGATGA TAGTGAATTC 
TATCATCGTG ATCTTATCGG CTGCGAAGTG ACCAATATAA ACGGCTATAA CATGGGTATT 
GTTGATCAGA TCGTGGAAAC AGGATCAAAC GACGTGCTGC TGATTAAAGC TAATGCCAAA 
GATGCCTTCG GCAAAGCGGA ACGTATGATC CCCTTTGTCC CTGAGCAGTT CATCAAACAG 
GTGGACTTGC AAGGGAAACA GATTTTAGTG GATTGGGATC CTGACTTCTA A 

 

Protein sequence

MSSNQELVVL GKLGSSHGIK GWLKITSYTD SVEGIFDYSP WLIKEQGVWR EVKVAQWRFQ 
GKAVVAELEG VATREHAQML TNCEIAIMPE QMKDLDDSEF YHRDLIGCEV TNINGYNMGI 
VDQIVETGSN DVLLIKANAK DAFGKAERMI PFVPEQFIKQ VDLQGKQILV DWDPDF