| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2846 |
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| Symbol | |
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| ID | 4279751 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3429834 |
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| End bp | 3431579 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638135664 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_751524 |
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| Protein GI | 114564010 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.218279 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGTAA TGGATGGATT ACAGCAAAAG CTGCAGCAAC AACTTAGTTG TATTTACAAC
GATGTCGACA TTGACATAAG TGTGCCAGCA TTGGCTGCAC AGCTCATCGA TATAATGCGT
ATCACCGAGT ATTGCCAAGT GCCCGAACCC TTTGTAAATC ATTGGTCTGA AAAAGACATC
ATTATGATCA CTTATGGCGA CAGTGTGATC CAACAAGGTG AGCGGCCACT CACCACGCTG
GCTCAATTTA TCGACAGCTA TTTAAGTTGC ATCAATGCTG TGCATATTTT ACCGTTTTTC
CCTTACAGTT CTGACGATGG TTTCTCGGTT ATCGACTATT CAAGTGTTAA CGAAGGCCTT
GGGTCGTGGG CAGATATCAG TGCTATTGCC AGTAAGCGGC GATTGATGTC AGATTTAGTG
ATCAATCATT GCTCTAGTCG GAGCTTATGG TTTGAGAACT TTTGCAAAGG TGAGGGCGTG
GGCCATGACT ACTTTTTTAC TGCCGAGCCA GATGATGACT TAAGCGCGGT GGTTCGGCCA
AGAACGTCAA CATTATTAAG ACCAACAGAG ACACCGAGCG GCACTCAACA TGTGTGGTGT
ACCTTTAGTC ATGATCAAGT TGATTTTGAT TTTCGTAATC CACAAGTATT AATCGAGTTT
GTACGTATCA TTCGTCAGTA TTTAGATGCG GGTGTGAGTA TTTTTCGCCT CGATGCAGTA
GCCTTTTTAT GGAAAATAGT CGGTAATAAA TCAATTAACT TACCGCAAAC CCATGAAGTT
ATCCGTCTAT TACGGACATT AATTGAACAC GCTCAGCAAG ACGTCATCAT CATTACCGAA
ACCAACATTC CTAACACCCA AAACTTAACT TACTTTGGTA ATGCTAACGA AGCACATTGT
ATTTATAACT TCTCATTGCC GCCTTTACTG ATCAACAGTC TTATTACCGG CAGTTGCTTA
TACTTAAAGC GTTGGCTTAT GAGTATGCCG CCCGCACAAG ACGGCACCAC CTACTTTAAT
TTTATAGCTT CTCACGATGG TATTGGTTTA CGCCCGGCAG AAGGCTTACT TGAAGAAGAT
GAGATTGATA CTCTGGTCGA CACAATGAAG CAGTTCGGTG GCCAAATATC ATCCAGAACC
ACAGAAGATG GCCTGCAAAA ACCTTATGAA ATGAACATTG CCCTGTTTGA TGCCTTACAA
GGCACCACTA AAGGTAAAGA CCAGTGGGGG ATGCAACGTT TTGTGTGCGC TCATACCATT
ATGTTAGCGC TCGAAGGTAT TCCTGGAATT TATATCCATA GTTTATTGGG AACCCGCAAC
GACTATCAAA AGCTGGCCAA TACTTCACAT AATCGCGCCA TTAACCGCCA TCGTTGGGAT
CTCAATCAAT TAACGGAACA ACTAAATGAT GCCAACAGCG ATCATAGCCA AGTGCTAACC
GAGCTGACCA ATTTAATCAA TATCCGAACG CAGCAAATTG CATTTCATCC CAATGCTACA
CAATTCACCT TACATCTAGG GTTACAGTTA TTTGGTTTTT GGCGTCAAAG TCGTAATCGT
AAACAAAGTA TATTTTGTAT CAGCAACGTA TCAGACCAAA TCACCGATCT TCGCATTAAT
GAACTTAATC TTATTATTGC AGAACACTGG GTAGACCTAT TGAGTGGACA ACCAATAGAA
GACATCACCC AAACCATGCA ACTGCAACCC TACCAAACCG TGTGGATTAG TAATGTACGT
ATCTAG
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| Protein sequence | MSVMDGLQQK LQQQLSCIYN DVDIDISVPA LAAQLIDIMR ITEYCQVPEP FVNHWSEKDI
IMITYGDSVI QQGERPLTTL AQFIDSYLSC INAVHILPFF PYSSDDGFSV IDYSSVNEGL
GSWADISAIA SKRRLMSDLV INHCSSRSLW FENFCKGEGV GHDYFFTAEP DDDLSAVVRP
RTSTLLRPTE TPSGTQHVWC TFSHDQVDFD FRNPQVLIEF VRIIRQYLDA GVSIFRLDAV
AFLWKIVGNK SINLPQTHEV IRLLRTLIEH AQQDVIIITE TNIPNTQNLT YFGNANEAHC
IYNFSLPPLL INSLITGSCL YLKRWLMSMP PAQDGTTYFN FIASHDGIGL RPAEGLLEED
EIDTLVDTMK QFGGQISSRT TEDGLQKPYE MNIALFDALQ GTTKGKDQWG MQRFVCAHTI
MLALEGIPGI YIHSLLGTRN DYQKLANTSH NRAINRHRWD LNQLTEQLND ANSDHSQVLT
ELTNLINIRT QQIAFHPNAT QFTLHLGLQL FGFWRQSRNR KQSIFCISNV SDQITDLRIN
ELNLIIAEHW VDLLSGQPIE DITQTMQLQP YQTVWISNVR I
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