Gene Sfri_2830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2830 
Symbol 
ID4279735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3411263 
End bp3412366 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content39% 
IMG OID638135648 
ProductdTDP-glucose 4,6-dehydratase 
Protein accessionYP_751508 
Protein GI114563994 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1088] dTDP-D-glucose 4,6-dehydratase 
TIGRFAM ID[TIGR01181] dTDP-glucose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.00106167 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTTTAA TGTTATTTTT AATTACAGGT GGTGCCGGTT TTATCGGTTC AGCAGTTATT 
CGGAATATAA TTCTGAATAC AGAGCATAGC GTCATTAACG TTGATGCATT AACTTATGCT 
GGTAACTTAG AGTCTTTGTC AGAAGTATCA GACAACGAAC GTTATTCTTT TAAGCAGGTC 
AATATCTGTG ACAGTCGAGC GCTAGCTCGA ATATTCACTG AGTATAAACC AGATGCAGTG 
ATGCATCTGG CTGCAGAAAC TCATGTTGAT CGTTCTATAG ATGGTCCTGC CGCTTTCATC 
GAAACTAATA TCGTTGGCAC ATATACTCTT CTGGAAGCAA CGCGAGCCTA TTGGAACACT 
TTGACTAAGG ATCGAAAGTC TGCATTCCGT TTTCATCATA TCTCAACTGA TGAAGTATAT 
GGGGATTTGG AAGGAACTGA TGATTTGTTT ACGGAAGAGA CATCGTATGA ACCATCAAGC 
CCTTACTCTG CATCAAAAGC ATCTTCTGAT CATTTGGTTC GTGCTTGGTT ACGTACGTAT 
GGTTTGCCGA CTATCGTGAC CAATTGCTCT AATAATTATG GTCCTTATCA TTTTCCAGAA 
AAACTCATCC CGTTAATGAT TTTAAATGCC TTAGACGGTA AGCCTTTACC TGTTTACGGC 
GATGGTATGC AAATTCGTGA TTGGTTATTT GTAGAAGATC ATGCTCGTGC TTTATATAGG 
GTGGTAACTG AAGGTGTTGT AGGCGAAACA TACAATATTG GTGGTCATAA TGAAAAATCG 
AATATTGAAG TTGTGAAAAC GATTTGTTCT TTACTAGAAG AGTTAGTTCC GAATAAACCG 
AATGGTATAA CTCAGTATTC GGATTTGATT ACTTATGTAA CGGACCGACC TGGTCATGAT 
TTTCGTTATG CAATTGATGC ATCAAAAATT GATCAAAAAT TGGGTTGGAA GCCTGAAGAA 
TCATTCGAAT CTGGTATTCG TAAAACAGTC GAATGGTACT TAGATAATAA GCAATGGTGG 
TGTCGTGTGC TTGATGGCTC CTACGCCAGA GAACGTTTAG GTGTGTCAAA TGAGTCGATA 
GTTGTGAATA AGGTAACTAA GTGA
 
Protein sequence
MVLMLFLITG GAGFIGSAVI RNIILNTEHS VINVDALTYA GNLESLSEVS DNERYSFKQV 
NICDSRALAR IFTEYKPDAV MHLAAETHVD RSIDGPAAFI ETNIVGTYTL LEATRAYWNT 
LTKDRKSAFR FHHISTDEVY GDLEGTDDLF TEETSYEPSS PYSASKASSD HLVRAWLRTY 
GLPTIVTNCS NNYGPYHFPE KLIPLMILNA LDGKPLPVYG DGMQIRDWLF VEDHARALYR 
VVTEGVVGET YNIGGHNEKS NIEVVKTICS LLEELVPNKP NGITQYSDLI TYVTDRPGHD 
FRYAIDASKI DQKLGWKPEE SFESGIRKTV EWYLDNKQWW CRVLDGSYAR ERLGVSNESI 
VVNKVTK