| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2706 |
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| Symbol | |
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| ID | 4279612 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3250526 |
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| End bp | 3251179 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135511 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_751385 |
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| Protein GI | 114563871 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0399435 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCACATCT TTACTTATCA ACCACCATCA ATTCCGTGGT TGGACATACG CTATAAAGAC
CGTGACATTA TCGTCATCAA TAAGCCTTCA GGCCTATTAT CAAATCCAGG ACGTTCACCA
GACACACACG ATACGGCCAT AACCCGTTTG CAACGATGTT ATCCTGAAGC GATTTTGATC
CATCGTTTAG ATTGTGATAC TTCTGGGATC ATGATTTTTG CTCGTACTAA AAAAGCAGAA
TCACATTTAA AAATTCAGTT TCAAAATCGA CAAGCTAAAA AGGTGTACAT TGCCGAAGTG
ATTGGCCATG TGGATGAACA GCAAGGTAAA GTGAACTTTG CGCTAGGAGC TAACCCTGAT
TCACCACCAT TCCAAATGCT TACTGATTCG GGTAAAGCAG CATTAACCTA TTTTAGTGTG
TTGGAGCATC GTGCTTATTC AACTTTGATG GAATTAAAAC CTCATACTGG CCGGACTCAT
CAGCTTAGGG TTCATATGTT GGCGCTTGGA CATACCATTT TAGGCGATGA ATTCTATGGC
GATGAATCAA CAATTAATGC CAGTAAACGG TTAAACTTGC ATGCGCAATC GCTCACAATT
ACCCATCCTT ATAGCCAAGT CGAGATGACG TTTTTTAGCC AGCATCCATT TTAA
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| Protein sequence | MHIFTYQPPS IPWLDIRYKD RDIIVINKPS GLLSNPGRSP DTHDTAITRL QRCYPEAILI
HRLDCDTSGI MIFARTKKAE SHLKIQFQNR QAKKVYIAEV IGHVDEQQGK VNFALGANPD
SPPFQMLTDS GKAALTYFSV LEHRAYSTLM ELKPHTGRTH QLRVHMLALG HTILGDEFYG
DESTINASKR LNLHAQSLTI THPYSQVEMT FFSQHPF
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