Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2702 |
Symbol | tgt |
ID | 4279608 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3246408 |
End bp | 3247532 |
Gene Length | 1125 bp |
Protein Length | 374 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638135507 |
Product | queuine tRNA-ribosyltransferase |
Protein accession | YP_751381 |
Protein GI | 114563867 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
TIGRFAM ID | [TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming [TIGR00449] tRNA-guanine transglycosylases, various specificities |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000654614 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATTTG AATTAGATAC AACTGATGGT CGTGCACGTC GCGGACGTCT TATTTTTGAC CGCGGTACTG TAGAAACGCC AGCATTTATG CCTGTGGGGA CTTACGGTAC GGTAAAAGGT ATGACGCCTG AAGAAGTACG CGCTACCGGT GCCGACATTT TATTGGGCAA CACCTTTCAT TTATGGTTAC GTCCTGGCGA AGAGATCATG CGTAAACACG GTGATTTGCA CGACTTTATG AATTGGCAAC GTCCTATTTT AACGGACTCG GGTGGATTCC AAGTGTTTAG TTTAGGTGAT ATTCGTAAAA TCACTGAAGA GGGTGTGCAT TTTCGTTCAC CGATAAATGG TGAAAAGATT TTCTTGGACC CAGAAAAATC AATGCAGATT CAGGATTCTT TAGGATCTGA TGTGGTGATG ATTTTTGATG AATGTACCCC GTATCCAGCA ACTCATGATG AAGCACGTAA GTCGATGCAA ATGTCACTGC GTTGGGCTAA GCGTTCACGT GATGAGTTTG ACCGCTTAGA AAACCCGAAC TCTTTGTTTG GCATTATTCA AGGTGGTGTG TTTGAAGATT TACGCGACGA AAGTGTAAAG GGTCTTTTAG ACATAGGTTT TGATGGTTAT GCAGTAGGTG GTTTAGCTGT TGGCGAGCCT AAAGCAGACA TGCACCGTAT TTTAGAACAT GTTTGTCCGC AAATTCCTGC TGACAAGCCG CGTTATTTAA TGGGCGTGGG CAAACCTGAA GATTTAGTCG AAGGCGTTCG TCGTGGTGTG GATATGTTTG ACTGTGTTAT GCCAACACGT AATGCCCGTA ATGGCCATTT ATTTACCAGT GAAGGTGTGA TTAAAATTCG TAATGCACGT CACCGTGATG ACACTGCAAC ATTAGATCCT AAGTGTGATT GTTACACTTG TAAAAACTAT TCACGTGCTT ATTTATACCA TTTAGATCGT TGTAATGAAA TTCTAGGTGC GCGTTTAAAC ACTATCCATA ATTTACGTTA TTACCAAATG TTGATGGAAG GTTTGCGCGG CGCAATTGAG ACAGGTACAT TAGACGCCTT TGTTAAGGAG TTCTATACCA GTTTTGGTCG TGAAGTACCT GAGTTAATCG TTTAA
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Protein sequence | MKFELDTTDG RARRGRLIFD RGTVETPAFM PVGTYGTVKG MTPEEVRATG ADILLGNTFH LWLRPGEEIM RKHGDLHDFM NWQRPILTDS GGFQVFSLGD IRKITEEGVH FRSPINGEKI FLDPEKSMQI QDSLGSDVVM IFDECTPYPA THDEARKSMQ MSLRWAKRSR DEFDRLENPN SLFGIIQGGV FEDLRDESVK GLLDIGFDGY AVGGLAVGEP KADMHRILEH VCPQIPADKP RYLMGVGKPE DLVEGVRRGV DMFDCVMPTR NARNGHLFTS EGVIKIRNAR HRDDTATLDP KCDCYTCKNY SRAYLYHLDR CNEILGARLN TIHNLRYYQM LMEGLRGAIE TGTLDAFVKE FYTSFGREVP ELIV
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