| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2686 |
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| Symbol | |
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| ID | 4279592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3227563 |
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| End bp | 3229023 |
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| Gene Length | 1461 bp |
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| Protein Length | 486 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638135491 |
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| Product | sodium/proline symporter |
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| Protein accession | YP_751365 |
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| Protein GI | 114563851 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0591] Na+/proline symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0529769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAATTC AAACACCAAT CATCATTACC TTTATTGGAT ACCTTGCCTT AATGATGGGC
ATTGGTTACT GGGCTTATCG TAAAACAGAC ACGGTTGATG ATTACATTCT CGGTGGTCGC
AAAATGGGGC CCGCAGTAAC AGCGTTAAGT GTTGGCGCAT CAGATATGTC TGGTTGGTTG
TTATTAGGCT TACCTGGTGC GGTGTATTTA AGTGGTTTAG GTGAAGCCTG GATTGGATTT
GGATTAGTTT TTGGTGCGTG GCTTAATTGG TTATTTGTTG CAAAACGACT GCGAATTTAT
ACCCAAGTTG CTAATAATTC TTTGACGTTA CCCGATTTTT TTGAAAACCG TTTTAATGAC
TCTCATGGAC TATTAAAATT GGTTTCGGCA TTAACGATCC TGATCTTTTT CACTTTCTAT
GCTTCTTCAG GCATGGTGGG TGGCGCGATA TTATTTGAAA AAGTATTCGG CCTCGATTAC
AACCTCGCCT TACTGATCGG TTCATTCATT ATTGTGTCTT ATACCTTCGT AGGTGGATTC
TTTGCCGTCA GCTGGACCGA TTTTTTCCAA GGCTGCTTAA TGTTAATTGC ATTATTAATT
GTACCCATTG CAATTTTCAG CCAACCCGAC ACTCAAGCAA GTTTTGAACA AATTGATCCT
GTCATGTTGT CATTTATAAA CGAAAATACT ACCGTCATTG GACTCGTGTC TCTCTTGGCG
TGGGGATTAG GCTATTTCGG TCAACCGCAT ATTTTGTCTC GTTTTATGGC TATCGGCAGC
CCAAAAGATT TAGTACTGTC CCGTCGAATA GCCATGAGCT GGATGATAGT GTCGTTAGTC
GGCGCCTTAG CCACTGGTAT CGCCGGTAGC CTTTATTTTG CTGCTGAGCC ACTTGAGAAC
TCAGAAACCG TATTTATTCA TTTAGCCCAT GCCGCTTTTA ATCCATGGAT TGGTGGTTTG
CTGATTGCAG CTATTTTGTC TGCCATCATG AGTACTATTG ATTCACAATT ACTGGTTTGT
TCTAGTGTCA TCACGGAAGA CTTTTACCTT AAATGGTTAC GTCCACAAGC CAGTAGCAAA
GAACTGATGT TAGTAGGCCG TATTGGCGTT ATTGCCATTG CCCTAGTCGC AGGCGTTGTT
GCGCTTAATC CTGAAAGCAG CGTGTTAGGA CTCGTCAGTT ATGCATGGGC TGGGTTTGGC
GCTGCGTTTG GTCCCGTGGT GTTATTGTCA CTATTTTGGC AAGGTTATAG CCGTAATGGT
GCAATATCAA CCATTCTAGT GGGTGCTTTA ACCGTTGTCG TTTGGAAACA ACTGACTGGC
GGTATTTTTG AATTATATGA AATCGTCCCT GGATTTGTTT TCGCAATATT CGTGGGGGTC
ATCGTCAGTA AAATATCACC ACCAACACCG AAAACTATCG GCGACTTTGC TGATTTCCGT
GAATCTTTAA AAACACAATA A
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| Protein sequence | MEIQTPIIIT FIGYLALMMG IGYWAYRKTD TVDDYILGGR KMGPAVTALS VGASDMSGWL
LLGLPGAVYL SGLGEAWIGF GLVFGAWLNW LFVAKRLRIY TQVANNSLTL PDFFENRFND
SHGLLKLVSA LTILIFFTFY ASSGMVGGAI LFEKVFGLDY NLALLIGSFI IVSYTFVGGF
FAVSWTDFFQ GCLMLIALLI VPIAIFSQPD TQASFEQIDP VMLSFINENT TVIGLVSLLA
WGLGYFGQPH ILSRFMAIGS PKDLVLSRRI AMSWMIVSLV GALATGIAGS LYFAAEPLEN
SETVFIHLAH AAFNPWIGGL LIAAILSAIM STIDSQLLVC SSVITEDFYL KWLRPQASSK
ELMLVGRIGV IAIALVAGVV ALNPESSVLG LVSYAWAGFG AAFGPVVLLS LFWQGYSRNG
AISTILVGAL TVVVWKQLTG GIFELYEIVP GFVFAIFVGV IVSKISPPTP KTIGDFADFR
ESLKTQ
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