Gene Sfri_2652 details

Gene Information

• Locus tag: Sfri_2652
• ID: 4279559
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 3181360
• End bp: 3183111
• Gene Length: 1752 bp
• Protein Length: 583 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638135451
• Product: PTS system, glucose-specific IIBC subunit
• Protein accession: YP_751331
• Protein GI: 114563818
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific; [COG1264] Phosphotransferase system IIB components
• TIGRFAM ID: [TIGR00826] PTS system, glucose-like IIB component; [TIGR02002] PTS system, glucose-specific IIBC component

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACATCTA AAACAATAAC AGCAGCTAAA CCGAAGAAGG CTATGATGAG TGGCGCATTT 
TCGGTTTTAC AAAAAGTGGG CAAATCGGTC ATGTTGCCGG TTTCCGTATT ACCCGTAGCG 
GGTATCTTAT TAGGCGTTGG GAGCGCGGGT TTTAGTGTGC TCCCCGATAT CGTCAATGTG 
TTAATGGTAC AAGCGGGCGA AGCCATTTTT AGCAATATGG GATTGCTATT CGCGATAGGT 
ATCGCGTTAG GATTTGCTAA AAATGATGGT GTGGCTGCTA TGGCGGCCTT AGTGGGATAT 
GCCATCATGG TTAAAACCAT CGGCGTACTT GAACCGGGTA CCGATGTGGG CGTGTTTGGC 
GGTATGATTG CCGGTGCTAT TGCTGCAGCG ACCTTTAACC GTTTCTTTAA AATTCAATTG 
CCTTCATATC TCGGATTCTT CTCAGGTAAA CGAAGTGTGC CTATTATTAC TGGTTTTGGA 
GCGATTTTTG CGGGAGTCAT CTTATCGTTC ATTTGGCCTC CGATAGGCAA TGCTATTGCT 
GTATTTTCCC ATTGGGCGGC ATATCAAAAC CCAACATTAG CCTTTGGTAT TTATGGTGTG 
GTTGAGCGTT CGTTAATTCC AGCTGGTTTA CACCATGTAT GGAATGTGCC TTTCTTCTTC 
GAAGCGGGCA ATTGTGTTGA CAGTTTAGGT AAACCTGCAA CAGGTGTATT GACGTGTTAT 
TTGCAAGCGG ACGATGCGAG TCGAGCTGCG GGTAATGGCT TCGGTCAACT TGCAGGAGGC 
TATCTGTTTA AAATGTTTGG TTTACCTGCC GCTGCAATGG CGATTTGGCA TACTGCCCGT 
CCAGAAAATC GTGTCATGGT CGGTAGTATC ATGATTTCGG CAGCGTTAAC TGCATTCTTA 
ACCGGAATTA CTGAACCTAT CGAGTTTGCA TTTTTATTTG CTGCACCTTT ACTTTATGTT 
GTACACGCGC TGATGGCTGG TTTTGCTTAT GTGCTTGTCA ATATGCTGGG TGTGGTTCAT 
GGAACTTCTT TCTCTCATGG CTTAATCGAT TTTCTTGTTC TTTCGGGGAA TTCGCAAAAA 
ATCTGGCTAC TGGTGGTGCT AGGTCTCATT TATGCGGCGT TGTATTACGT AGTGTTCAGA 
TTCTTAATTT TGAAGTTCGA CTTGAAAACG CCAGGGCGGA TGGATGTCGA ATTAGAGATC 
GTTTCATCAG AAGGGACAGA AAGAGCGCGT AACTTTATCG AAGCCTTCGG CGGACCAGAG 
AATCTGGTCA ATGTGGATTC TTGTATTACC CGCTTACGGA TGGATGTGCA CGATACCAGT 
AAAGTGGATC AGGCTAGATT GAAGCAGTTA GGCGCCAGTG GCGTATTGAT TTCGGGGAAT 
GCAGTACAAG CCATTGTGGG GACTATCGCC GAAGTGTCAC GTACCGAAAT TGATGAAATG 
CTCGCGTCGG GTGGTTATCT TTCCGCTACT CCCACGCCTG TAATAGCAAC AGCAACGGTT 
AACATTTCAG CAAAGGATCG CGAGCAAGCT CAAGCCATCC TGCCACTATT GGGTGACGTG 
AGTTCATGTC GTGCTATTGC TGATAATCGT TTACGCTTAG AAGTGAAAGA TGCCAGTCTA 
TTAGACAGTA CCGCCCTTCA AGCCCATGGC ATTGAAGCTA TGTTGGTTTT AAATCCGAAC 
TTGGTTCATT TAATTTTTAG TATGAATACA GCAGGACTAG CCAGCGTGTT AAATGAGACT 
TTTGCCGACT GA 

 

Protein sequence

MTSKTITAAK PKKAMMSGAF SVLQKVGKSV MLPVSVLPVA GILLGVGSAG FSVLPDIVNV 
LMVQAGEAIF SNMGLLFAIG IALGFAKNDG VAAMAALVGY AIMVKTIGVL EPGTDVGVFG 
GMIAGAIAAA TFNRFFKIQL PSYLGFFSGK RSVPIITGFG AIFAGVILSF IWPPIGNAIA 
VFSHWAAYQN PTLAFGIYGV VERSLIPAGL HHVWNVPFFF EAGNCVDSLG KPATGVLTCY 
LQADDASRAA GNGFGQLAGG YLFKMFGLPA AAMAIWHTAR PENRVMVGSI MISAALTAFL 
TGITEPIEFA FLFAAPLLYV VHALMAGFAY VLVNMLGVVH GTSFSHGLID FLVLSGNSQK 
IWLLVVLGLI YAALYYVVFR FLILKFDLKT PGRMDVELEI VSSEGTERAR NFIEAFGGPE 
NLVNVDSCIT RLRMDVHDTS KVDQARLKQL GASGVLISGN AVQAIVGTIA EVSRTEIDEM 
LASGGYLSAT PTPVIATATV NISAKDREQA QAILPLLGDV SSCRAIADNR LRLEVKDASL 
LDSTALQAHG IEAMLVLNPN LVHLIFSMNT AGLASVLNET FAD