| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2573 |
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| Symbol | |
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| ID | 4279480 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3078748 |
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| End bp | 3079086 |
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| Gene Length | 339 bp |
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| Protein Length | 112 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638135366 |
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| Product | helix-hairpin-helix repeat-containing competence protein ComEA |
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| Protein accession | YP_751252 |
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| Protein GI | 114563739 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1555] DNA uptake protein and related DNA-binding proteins |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.73465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTTAT CATTGACATT AACTGCATTA ATTACGTGTT TATGTTGTTT ACTCAGCAGT
AATTCTTTTG CTGCAGAAGC GGCAAAAGCA ATGGCAGAGC CTACAAAGAA AGTCACAAAA
TCGATTGAGA AAAAGTCAAC GGCTATGCAA AAGGTCAATA TCAATAAAGC CAGCGCTGTG
GAATTACAAG CACTGAAAGG TATTGGGCAA GCCAAAGCAA AAGCGATTGT TGACTATCGA
ACCAAAAACG GCAAATTTAC CGATCTGAAA CAGTTAACCA TGGTGACAGG AATTGGTGAA
AAGTTAGTTA GCCAGAATAC CGAGAATATG AGCTTCTAA
|
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| Protein sequence | MKLSLTLTAL ITCLCCLLSS NSFAAEAAKA MAEPTKKVTK SIEKKSTAMQ KVNINKASAV
ELQALKGIGQ AKAKAIVDYR TKNGKFTDLK QLTMVTGIGE KLVSQNTENM SF
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