| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2461 |
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| Symbol | |
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| ID | 4279372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2927444 |
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| End bp | 2929456 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638135257 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_751144 |
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| Protein GI | 114563631 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.360751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACGCTA TTCAAACTGA AATGGATCAA CTTACTCACA CCATTAATCA ACATAATATT
CGTTATTACG TTGATGATGC TCCGTCAATA CCCGATGCTG AATACGATAG ATTAATTAAG
CGCTTAACTG AATTAGAAGG TGACTATCCG CAATTTAAAT CGGTAGATTC ACCGACACAG
CGCGTCGGTG GTATAGCATT ACAAAAATTT GCTCAAATTA CCCACCTTAA ACCGATGTTA
AGTCTCGACA ATGCGTTTGA ACAAGCCGAT TTTGCAGCAT TTAATAAGCG TATAACTGAT
AAAGTCGATA ACGTTGATTA TGTTTGCGAA CCAAAACTAG ACGGATTGGC CGTGAGTATT
ACTTATCGTT TTGGCGTTCT TGAACGCGCC GCAACGCGAG GTGATGGCAG TGTCGGCGAA
GATATTACCG CTAATGTGCG TACTATTCGT TCTATTCCGC TCAAGTTACG CGGTGAAGGA
TTTCCAGATT TAGTTGAAGT ACGAGGCGAA GTGTTTATGC CTAAAGCGGC ATTTGAGGTA
TTAAACCAGC GTCAAATAAG CAAAGGTGAC AAAGTCTTTG TTAATCCTCG CAACGCAGCC
GCCGGCAGTT TGCGCCAATT AGACAGTAAA ATTACCGCTT CAAGGGCTCT TGGGTTTTAT
GCTTATGCAT TAGGTGTAGT CGAAGGCGAG TCACAACCGA TGCAAACAAG CCACTATGGC
CAACTAACGC AGCTGCAACA ATGGGGTGTC CCCGTCAGTA GCGAAGTGAA AGTGACTGAT
TCATTAGAAA AAGTCTATGC ATATTACGCC GATATTATGG CCAGACGAAG TGCGCTTGAA
TATGAAATCG ACGGTGTCGT CATAAAGGTT AATGACATTG CCAAGCAACA AACACTTGGT
TTTGTGGCTA AAGCTCCTCG ATGGGCCATA GCCTATAAAT TTCCAGCCCA GGAAGAAATG
ACCTTGTTAG AGTCTGTTGA CTTTCAGGTT GGCCGAACGG GTGCTGTTAC CCCTGTCGCT
CGCCTCAAAC CAATATTTGT CGGTGGCGTG ACGGTGTCGA ACGCGACCTT GCACAATGCT
GATGAAATTG CCCGTCTTGG GGTGAAAATA GGCGATACAG TGATTATTCG CCGCGCAGGT
GACGTTATCC CGCAAATTGT TGCTATCGTG CCAGAAAAGC GCCCCGATGA TGCACAAGAT
ATTATCTTTC CACAGCATTG CCCTGTGTGC CAAAGCATTG TTGAGCGTTT AGAAGGCGAA
GCTGTAGCGC GTTGTAGTGG TGGACTCTTT TGTGAAGCGC AACGTAAAGA GGCTATTAAG
CATTTTGCAT CCCGTAAAGC ATTAAATATT GATGGCATGG GCGATAAAAT CGTTGAACAG
TTAATTGACA AAGAATTAGT CAAAACGCCA GCAGACTTGT TTTCACTTAC CGCTTCAAGC
GTCACGATGC TAGATCGCAT GGCGATGAAG TCAGCAACAA ATATTGTCGC GGCGATTAAA
CAAGCTAAAA CCACCACGTT GGCGCGTTTT TTATATAGTC TTGGGATCCG TGAAGTAGGG
GAAGCTACCG CTGCTAATTT AGCACAACAC TTTACTGAAT TTGAGCGTAT TCGAACCGCT
AGCGTTGAAC AACTGTTAGA AGTTGCTGAT GTTGGTGACA TCGTTGCCAA GCACATTCGA
CAATTTTTTT CTCAGCCACA TAACATTGAA GTAATAGATC AATTGCTTGA AGCCGGTATT
ACTTGGCCTG TTATTGAACA AGCTGACGAG TCGCAGCTTA GTCTTAAAGG GCAAACGTGG
GTGTTAACCG GTACGTTAAC CCAGCTTAAT CGTAACGATG CCAAAGCCCA ATTACAGGCT
TTAGGCGCCA AAGTGGCTGG CAGTGTCTCG AAAAATACTG ATTGCCTTGT CGCTGGCGAG
GCTGCAGGCT CTAAGTTAGC AAAAGCGGAA GAGTTGGGCG TTAAAGTGAT AGATGAACAA
GCTCTGATGG ATCTATTGAA TGCGGCTAAC TAA
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| Protein sequence | MHAIQTEMDQ LTHTINQHNI RYYVDDAPSI PDAEYDRLIK RLTELEGDYP QFKSVDSPTQ
RVGGIALQKF AQITHLKPML SLDNAFEQAD FAAFNKRITD KVDNVDYVCE PKLDGLAVSI
TYRFGVLERA ATRGDGSVGE DITANVRTIR SIPLKLRGEG FPDLVEVRGE VFMPKAAFEV
LNQRQISKGD KVFVNPRNAA AGSLRQLDSK ITASRALGFY AYALGVVEGE SQPMQTSHYG
QLTQLQQWGV PVSSEVKVTD SLEKVYAYYA DIMARRSALE YEIDGVVIKV NDIAKQQTLG
FVAKAPRWAI AYKFPAQEEM TLLESVDFQV GRTGAVTPVA RLKPIFVGGV TVSNATLHNA
DEIARLGVKI GDTVIIRRAG DVIPQIVAIV PEKRPDDAQD IIFPQHCPVC QSIVERLEGE
AVARCSGGLF CEAQRKEAIK HFASRKALNI DGMGDKIVEQ LIDKELVKTP ADLFSLTASS
VTMLDRMAMK SATNIVAAIK QAKTTTLARF LYSLGIREVG EATAANLAQH FTEFERIRTA
SVEQLLEVAD VGDIVAKHIR QFFSQPHNIE VIDQLLEAGI TWPVIEQADE SQLSLKGQTW
VLTGTLTQLN RNDAKAQLQA LGAKVAGSVS KNTDCLVAGE AAGSKLAKAE ELGVKVIDEQ
ALMDLLNAAN
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