| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2399 |
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| Symbol | |
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| ID | 4279310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2860423 |
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| End bp | 2863959 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638135195 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_751082 |
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| Protein GI | 114563569 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00178528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCTAT TTAGTGTACT CACGCCGCCG AGTGTAAAAA AAGGCCAACA AACGCAAACT
TTGGCAACAT TGGGTGGCGT GTCGCAAGCC ATCACCCTCG CCAATTTAAT CAATAACCAT
GCTGGCACCA GTATTATTGT CACTCACGAT ACGCCTAGTG CGTTATCGCT TGAGGTCGAA
CTGAGTTATT TATTAAACCA CATCAATGTG AATGTGTGTT TGTTCCCCGA TCGTGAAACC
TTGCCTTACG ATAGCTTTTC GCCACACCAA GACTTGATAT CACAGCGACT TGAAACCTTA
GCTAATATTG GTCAAAGCCA GCACAATGTG GTCATAGTAC CAGTAAATAC CTTAATGGTT
CGCCTACCAC CGAAGTCGTT TATGACCGCC AATGTTATGG TGCTTAATAA AGGCGACACA
TACAGTTTAC AGCAAGCCAG GCAACACCTT ACTGATACCG GTTACCATAT CGTCGATCAA
GTATATGAAC ATGGTGAGTT TGCTATTCGT GGCTCTATTA TCGATATTTT CCCTACTGGC
TCAAAACAAC CATTACGCAT AGAGTTGTTT GACGATGAAG TCGAATCGAT ACGCTTTTTT
GATGTTGATA CCCAGCGTTC AGGCATGGCT CGCGATGCGA TTCGCATGTT GCCAGCCAAA
GAATTCCCAA CCGACAACCA TGCTATTGAA GGTTTTAGAC AACGTTATCG TCGTCGCTTT
GAAGTAATTT CAAAAGAAGC CGAGTCAGTT TATCAACTCG TTAGCCGTAA TTTAATGCCC
GCAGGCATCG AAAACTACTT ACCGTTATTT TTCGATGATA CGGCAACATT GTTTGATTAT
TTACCGCAAA ACAGTCAACT CATCACCTTA GGCAATATTG AAAAAGCCAG CTTAGCGCAC
TTACATGAAG TAAACGTTCG CTACGAAGAC CGACGAGTTG ATCCACTAAG GCCGTTATTG
GCGCCAAAAG AACTTTACTT GCTTAATGAT GAATTATTCG CGGCATTTAA ATCTTTTACT
CGTACCCAAT TATTACAGCA ATATATTGCC ACCGACACCA ATAATGCCGG CGAGCCGCTA
GCTGAAGTTG AACTTCCAAC GCATACCCTC ATCGCTAACG TTGAAACACT GCCAGACATC
AATGCTAACC ATAAACTCAA ACAACCACTC ATTGCGTTAC AAGAGTATTG TCAGCAGCAT
CCAAAATTAG TGTTTAGTGC CGAATCGGAA GGCCGCCGTG AAGCCCTGTT AGACTTATTT
GCCAAAATTG ACATTAAACC CAAGCAGTTT GCTCATCTTA ACGACTATCT AGCAGCCAAA
GACAATATCG GTTTAATCGT GTCACCTTTG GCGCGAGGTT GTGTGCTAAC CGACACCGCA
AAAGGTGCCG TGAGCATCAT TTGTGAAACC GAACTGTTTG GTCAGCGTAT TTCGCAGCAA
CGTCGCCGCG AAAAGCAAAA GCAAGTTAGC ACCGATGTTT TAGTTAAAAA CCTAGCTGAA
CTTAAAGTCG GTCAACCTAT TGTCCACTTA GAGCACGGTG TTGCGTTATA CCAAGGATTA
GAAACGCTCG ATACTGGCGG TTTGGTTGCA GAATACTTAA AACTGGAATA TTCAGGTGGT
GACAAGTTGT ATGTGCCAGT GTCGTCACTG CATCTTATCA GTCGCTACAA TGCCAGCGGC
GATGGTAATA CTCACCTCAA TAAGTTAGGT AACGAAACCT GGGCTAAGGC CAAGAAAAAA
GCCATCGAAC GTATTCGTGA TGTGGCCGCT GAATTGTTGG ATGTCTATGC CCGTCGTCAA
GCTCGCCCTG GCGATGCGAT GAGTATTGAT GAAGAAGAAT ACGCCCAATT CAGTCAAGGT
TTCCCCTTTG AAGAAACCGT CGACCAAGAA AGTGCCATTC ACGCAGTACT TGAAGACATG
CAAGCACCAC GCGCAATGGA TCGTTTAGTC TGTGGTGACG TGGGTTTTGG CAAAACAGAA
GTGGCTATGC GAGCAGCATT TGTTGCTGTG AATGCCGGTA AACAAGTGGT GGTGTTAGTA
CCGACTACCC TACTTGCCCA GCAACACTAC GAAAACTTTA AAGACCGTTT TGCTGATTGG
CCTATCGTTA TTGAAGTGAT GTCACGCTTT AGAACCGCTA AAGAGCAAAG CAGTGTTGTC
GAACAACTGT CTGAAGGTAA AGTCGATATC GTTATCGGTA CCCATAAGTT ACTGTCTTCA
GAAGCTAACT TCGATAACCT CGGGTTATTA GTCATCGACG AAGAACACCG CTTTGGTGTG
CGTCAAAAAG AAAAAATTAA AGCATTACGT GCCAATGTCG ACATTTTAAC CCTCACCGCC
ACACCGATTC CGCGGACATT GAACATGGCT ATGTCAGGTA TGCGAGATTT ATCGATTATC
GCTACCCCTC CAGCTAAACG TTTGGCAGTA AAAACCTTTG TGCGTGAATA TGACAAAGCC
ACGGCACGAG AAGCCATCTT GCGTGAAATT TTGCGTGGTG GCCAAGTGTA TTATCTGCAT
AATAATGTTG AGACCATTGA AAAAACGGCG CAAAACATTC GCGATTTACT GCCAGAAGCC
CGCGTCATAA CCGCCCATGG GCAAATGCGT GAACGCGATC TTGAAAAAGT CATGTCAGAC
TTTTATCACC AACGTTTTAA CGTGTTGGTA TGTACTACCA TTATCGAAAC CGGTATCGAT
GTGCCTAGTG CCAATACCAT CATTATCGAC CGAGCCGATA TGTTTGGTTT AGCACAATTG
CACCAGCTTC GCGGCCGTGT TGGCCGATCG CATCATCAAG CCTATGCTTA TATGATGACG
CCACATCCTA AACGTATGAC CCCAGATGCC CGCAAACGTC TTGCAGCCAT TGAAGCCCTA
GAAGATCTTG GCGCAGGTTT TTTACTCGCC ACCCAAGATT TAGAAATTCG CGGTGCGGGT
GAATTGCTTG GCGACGAACA AAGTGGCCAT ATCTCAAAAA TTGGTTTTAG CTTATACATG
GAAATGCTGG AATCTGCCGT AAAAGCCCTC AAAGAAGGAA AAGAGCCTTC TTTAGCCTAT
ATGATGAGTG CCAAAGCAGA AATTGATTTA CGCATTCCGG CATTATTACC AGAAGATTAC
GTCAGTGATG TTAATATGCG CTTATCATTG TATAAACGAA TCGCTAACTG CGAAACCGAC
ACCATGCTCG ATGAACTTAA AGTCGAATTT ATTGACCGAT TTGGTATGTT ACCTGTGCCA
ACCCGTAATT TGATGGCGAT TACTCTGTAT AAACATCAAG CAACCGCGTT AGGTATTCAT
AAAATTGAAA TGCATGCCAA GGGTGGCAGT GTCGAATTTG GTCAAGAAAA TCACGTCGAT
CCGATGTTTA TTATTGGTTT GTTGCAAAAC CAACCACAAA TCTATCGAAT GGACGGGCCA
AATAAGTTAA AGTTCAACAT TCCTGCTGAG ACAAGCAAAG AGCGTCTTGA GTTAATCAAC
ACCCTGCTTG GACAGTTCGC TAAACATCAA ATTTTGGAGA CAAATAGTGC TTCGTAA
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| Protein sequence | MNLFSVLTPP SVKKGQQTQT LATLGGVSQA ITLANLINNH AGTSIIVTHD TPSALSLEVE
LSYLLNHINV NVCLFPDRET LPYDSFSPHQ DLISQRLETL ANIGQSQHNV VIVPVNTLMV
RLPPKSFMTA NVMVLNKGDT YSLQQARQHL TDTGYHIVDQ VYEHGEFAIR GSIIDIFPTG
SKQPLRIELF DDEVESIRFF DVDTQRSGMA RDAIRMLPAK EFPTDNHAIE GFRQRYRRRF
EVISKEAESV YQLVSRNLMP AGIENYLPLF FDDTATLFDY LPQNSQLITL GNIEKASLAH
LHEVNVRYED RRVDPLRPLL APKELYLLND ELFAAFKSFT RTQLLQQYIA TDTNNAGEPL
AEVELPTHTL IANVETLPDI NANHKLKQPL IALQEYCQQH PKLVFSAESE GRREALLDLF
AKIDIKPKQF AHLNDYLAAK DNIGLIVSPL ARGCVLTDTA KGAVSIICET ELFGQRISQQ
RRREKQKQVS TDVLVKNLAE LKVGQPIVHL EHGVALYQGL ETLDTGGLVA EYLKLEYSGG
DKLYVPVSSL HLISRYNASG DGNTHLNKLG NETWAKAKKK AIERIRDVAA ELLDVYARRQ
ARPGDAMSID EEEYAQFSQG FPFEETVDQE SAIHAVLEDM QAPRAMDRLV CGDVGFGKTE
VAMRAAFVAV NAGKQVVVLV PTTLLAQQHY ENFKDRFADW PIVIEVMSRF RTAKEQSSVV
EQLSEGKVDI VIGTHKLLSS EANFDNLGLL VIDEEHRFGV RQKEKIKALR ANVDILTLTA
TPIPRTLNMA MSGMRDLSII ATPPAKRLAV KTFVREYDKA TAREAILREI LRGGQVYYLH
NNVETIEKTA QNIRDLLPEA RVITAHGQMR ERDLEKVMSD FYHQRFNVLV CTTIIETGID
VPSANTIIID RADMFGLAQL HQLRGRVGRS HHQAYAYMMT PHPKRMTPDA RKRLAAIEAL
EDLGAGFLLA TQDLEIRGAG ELLGDEQSGH ISKIGFSLYM EMLESAVKAL KEGKEPSLAY
MMSAKAEIDL RIPALLPEDY VSDVNMRLSL YKRIANCETD TMLDELKVEF IDRFGMLPVP
TRNLMAITLY KHQATALGIH KIEMHAKGGS VEFGQENHVD PMFIIGLLQN QPQIYRMDGP
NKLKFNIPAE TSKERLELIN TLLGQFAKHQ ILETNSAS
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