Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2381 |
Symbol | |
ID | 4279292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2838049 |
End bp | 2839122 |
Gene Length | 1074 bp |
Protein Length | 357 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638135177 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_751064 |
Protein GI | 114563551 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATAGGT TCATCAGCAT GAAGAAAATG GCAATTCCTT TACTTTGTAT TGCAGTATTG AGTGGTTGCA GCGGCGAAGA AGAGCAAACA AAAAAAGATG AAAAATTTGC TATTCCGGTT GAAACAGCAC TGGTCACCAC AGGCAATGTA TCGTCTTTTT ACAGCACCAC CGCCACACTT GAAGCACCTG AAGAGTCTCA TGTGATGAGC CGCATTGCTG GGATAATCGA AAAGATTAAC GTTGAAGAAG GCGATCGGGT TACCAAAGGA CAAATACTTG CGGTAATTGA TGCCAAGCGT CAACGCTATG ATTTCAATCG TTCAGAAGCC GAAGTGCAGA TTATTCAGCA AGAATTAAAT CGTTTAAACA AAATGAACAA CAAAGAGTTT ATTAGCCAGG ATCAGATGGC CAAACTCGAG TTCAACCTGC AAGCTGCTAA AGCACAGCGT GACTTAGCAG AACTGCAAGT TAAAGAAAGC CAAATCACCT CGCCTATTAA TGGTGTCGTT GCTGCACGTT ATGTTAAAAC GGGCAATATG GCCAAAGAGT TCCAAGAGTT ATTTTATGTT GTCAATCAAG ACCAACTTCA CGGCATATTA CACTTACCAG AACAACAGCT TGCAAGTTTA CGAGTTGGTC AACAAGCCAG TATTATTCAA CAACATCAAG GTAGCGCTGC CCATATTATC GATGCAAAAG TACTGCGCAT TAGTCCAATA GTGGATGCTC AAAGCGGTAC GTTTAAAGTG ACATTAGCCG TGCCAAATCA AGATGCTACA TTAAAAGCGG GTATGTTTAC TCGGGTTGAA CTTAAATACG ACACCCATCG TGATGTACTT ACCGTGCCTT ATAACGCATT AATCAACCAA GACAACACTC AAGCTTTATA TGTGATAAAA GACACCAAGG CACAACGACG TGAAGTCACG TTGGGATATC GTGAAAATAA CACGGTTGAA ATTTTATCGG GTGTTGAAGA TGGCGAACAA ATTGTCATCC GGGGCCAGCA GAACCTCAAA GATCAATCAT TAGTGGAAAT TATTACCCCA CTTAGCTTCG CAGCTATTCG ATAA
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Protein sequence | MDRFISMKKM AIPLLCIAVL SGCSGEEEQT KKDEKFAIPV ETALVTTGNV SSFYSTTATL EAPEESHVMS RIAGIIEKIN VEEGDRVTKG QILAVIDAKR QRYDFNRSEA EVQIIQQELN RLNKMNNKEF ISQDQMAKLE FNLQAAKAQR DLAELQVKES QITSPINGVV AARYVKTGNM AKEFQELFYV VNQDQLHGIL HLPEQQLASL RVGQQASIIQ QHQGSAAHII DAKVLRISPI VDAQSGTFKV TLAVPNQDAT LKAGMFTRVE LKYDTHRDVL TVPYNALINQ DNTQALYVIK DTKAQRREVT LGYRENNTVE ILSGVEDGEQ IVIRGQQNLK DQSLVEIITP LSFAAIR
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