Gene Sfri_2381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2381 
Symbol 
ID4279292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2838049 
End bp2839122 
Gene Length1074 bp 
Protein Length357 aa 
Translation table11 
GC content42% 
IMG OID638135177 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_751064 
Protein GI114563551 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAGGT TCATCAGCAT GAAGAAAATG GCAATTCCTT TACTTTGTAT TGCAGTATTG 
AGTGGTTGCA GCGGCGAAGA AGAGCAAACA AAAAAAGATG AAAAATTTGC TATTCCGGTT
GAAACAGCAC TGGTCACCAC AGGCAATGTA TCGTCTTTTT ACAGCACCAC CGCCACACTT
GAAGCACCTG AAGAGTCTCA TGTGATGAGC CGCATTGCTG GGATAATCGA AAAGATTAAC
GTTGAAGAAG GCGATCGGGT TACCAAAGGA CAAATACTTG CGGTAATTGA TGCCAAGCGT
CAACGCTATG ATTTCAATCG TTCAGAAGCC GAAGTGCAGA TTATTCAGCA AGAATTAAAT
CGTTTAAACA AAATGAACAA CAAAGAGTTT ATTAGCCAGG ATCAGATGGC CAAACTCGAG
TTCAACCTGC AAGCTGCTAA AGCACAGCGT GACTTAGCAG AACTGCAAGT TAAAGAAAGC
CAAATCACCT CGCCTATTAA TGGTGTCGTT GCTGCACGTT ATGTTAAAAC GGGCAATATG
GCCAAAGAGT TCCAAGAGTT ATTTTATGTT GTCAATCAAG ACCAACTTCA CGGCATATTA
CACTTACCAG AACAACAGCT TGCAAGTTTA CGAGTTGGTC AACAAGCCAG TATTATTCAA
CAACATCAAG GTAGCGCTGC CCATATTATC GATGCAAAAG TACTGCGCAT TAGTCCAATA
GTGGATGCTC AAAGCGGTAC GTTTAAAGTG ACATTAGCCG TGCCAAATCA AGATGCTACA
TTAAAAGCGG GTATGTTTAC TCGGGTTGAA CTTAAATACG ACACCCATCG TGATGTACTT
ACCGTGCCTT ATAACGCATT AATCAACCAA GACAACACTC AAGCTTTATA TGTGATAAAA
GACACCAAGG CACAACGACG TGAAGTCACG TTGGGATATC GTGAAAATAA CACGGTTGAA
ATTTTATCGG GTGTTGAAGA TGGCGAACAA ATTGTCATCC GGGGCCAGCA GAACCTCAAA
GATCAATCAT TAGTGGAAAT TATTACCCCA CTTAGCTTCG CAGCTATTCG ATAA
 
Protein sequence
MDRFISMKKM AIPLLCIAVL SGCSGEEEQT KKDEKFAIPV ETALVTTGNV SSFYSTTATL 
EAPEESHVMS RIAGIIEKIN VEEGDRVTKG QILAVIDAKR QRYDFNRSEA EVQIIQQELN
RLNKMNNKEF ISQDQMAKLE FNLQAAKAQR DLAELQVKES QITSPINGVV AARYVKTGNM
AKEFQELFYV VNQDQLHGIL HLPEQQLASL RVGQQASIIQ QHQGSAAHII DAKVLRISPI
VDAQSGTFKV TLAVPNQDAT LKAGMFTRVE LKYDTHRDVL TVPYNALINQ DNTQALYVIK
DTKAQRREVT LGYRENNTVE ILSGVEDGEQ IVIRGQQNLK DQSLVEIITP LSFAAIR