Gene Sfri_2374 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2374 
Symbol 
ID4279285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2829129 
End bp2830418 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content40% 
IMG OID638135170 
ProductOmpA/MotB domain-containing protein 
Protein accessionYP_751057 
Protein GI114563544 
COG category[M] Cell wall/membrane/envelope biogenesis
[S] Function unknown 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins
[COG3455] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03349] type IV / VI secretion system protein, DotU family
[TIGR03350] type VI secretion system OmpA/MotB family protein 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACGATA AAACCATCGT TAAACCTCGC CCAGGGAAAG GGTCGGGTAT GGCTGCCAAT 
AAAACAAAAG TCGATGATGA TAGTCAGAAA ACCTTGATCC AAGATCATCG TGCCGATAAT
CGCGACAACC GATCGCAACT AAGCTTATCG CAAAACCCAA TCGTTGATTT TGCGGGTACG
CTTTTATCTA TTTGTACTCA GTTACGAAAT AGTACCGAGC ATGATGATGT CAATACTTTA
CGGGTGCATT GTGTCGAACT CATCAAGAAT TATGAGCAAC AATTGCGTAA TGCAAATTTA
GCGTCAGATG ACATTAAGTC TGCTCGATAT TGCTTGTGTT GTTTTATTGA TGAAGTAGTT
CTCAATACGC CTTGGGGAGA GCAAAGCTAT TGGGCATCAG ACAGTTTGCT TTCTACTTTT
CATAATGAAA CTTTAGGTGG TGAATATTTC TATACCTTGC TTGAAGCATC ACTTCGTCAT
CCTTCTGAAA AGTGTAATTT ACTTGAGTTG ATGTATTTAT GTTTAACTCT TGGTTTTGTT
GGCAAAATGA GAGTTGAGCC TCAAGGCGAT CAAAAATTAG AAGCATTACG TGAAAAAACG
TATTTAGCCA TTCAATCTTG CAAAGGCGAT TTTCATAGAG AGTTATCACC AGGATGGCGA
CAGAATATTG TCCCTAATTT AACTTTTCAG CAGCCATTTC CTTTATGGGT TATCGGGGCA
TTATTTGGTG TGGTTACTTT ATTTATCTAT ATGGGTTTTA GTTACAGCAT CAACAATTAC
TCATCAGAAG CTTATAAAGA ATTGACTTCG ATTGTGCCTT GGGAAAAAAC CATTGATGCG
CAACAACAAA TTAGTCGTGA TGAAGCATTA TTACTGCAAC AACTATTACA AACCGAAATT
GGCAAAAATT TACTCGAAGT AGAACAATTA AGCGATCGTG TGAGGATCCG CATTGGGGCG
ACTGAACTTT TTGCTTCTGG TAACACTCAA CCTCGGTCTG ATTTTGAAGC GATTTTAGCC
AAAATAGCTC TGACGCTAGA GAGTACCGAT GGCAAAATTT TGATCACCGG TCATACCGAT
GATGAACCCA TTTTTACCTC TAAATATCCA TCAAATTGGC ATCTTTCATT AGCAAGAGCA
ACGTCGATTG CGAACGTTCT GGCTAATAGC GCATCGCTAA GTGGCCGATT GTGGCCTGAA
GGTCGTGGTG AGTCTGAGCC CCGTGTGGTG AATGACAATG AACAGAACCG CGCGTTAAAT
CGTCGAATCG AAATCGACTT ATTGTTTTAG
 
Protein sequence
MNDKTIVKPR PGKGSGMAAN KTKVDDDSQK TLIQDHRADN RDNRSQLSLS QNPIVDFAGT 
LLSICTQLRN STEHDDVNTL RVHCVELIKN YEQQLRNANL ASDDIKSARY CLCCFIDEVV
LNTPWGEQSY WASDSLLSTF HNETLGGEYF YTLLEASLRH PSEKCNLLEL MYLCLTLGFV
GKMRVEPQGD QKLEALREKT YLAIQSCKGD FHRELSPGWR QNIVPNLTFQ QPFPLWVIGA
LFGVVTLFIY MGFSYSINNY SSEAYKELTS IVPWEKTIDA QQQISRDEAL LLQQLLQTEI
GKNLLEVEQL SDRVRIRIGA TELFASGNTQ PRSDFEAILA KIALTLESTD GKILITGHTD
DEPIFTSKYP SNWHLSLARA TSIANVLANS ASLSGRLWPE GRGESEPRVV NDNEQNRALN
RRIEIDLLF