Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2374 |
Symbol | |
ID | 4279285 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2829129 |
End bp | 2830418 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638135170 |
Product | OmpA/MotB domain-containing protein |
Protein accession | YP_751057 |
Protein GI | 114563544 |
COG category | [M] Cell wall/membrane/envelope biogenesis [S] Function unknown |
COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins [COG3455] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03349] type IV / VI secretion system protein, DotU family [TIGR03350] type VI secretion system OmpA/MotB family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACGATA AAACCATCGT TAAACCTCGC CCAGGGAAAG GGTCGGGTAT GGCTGCCAAT AAAACAAAAG TCGATGATGA TAGTCAGAAA ACCTTGATCC AAGATCATCG TGCCGATAAT CGCGACAACC GATCGCAACT AAGCTTATCG CAAAACCCAA TCGTTGATTT TGCGGGTACG CTTTTATCTA TTTGTACTCA GTTACGAAAT AGTACCGAGC ATGATGATGT CAATACTTTA CGGGTGCATT GTGTCGAACT CATCAAGAAT TATGAGCAAC AATTGCGTAA TGCAAATTTA GCGTCAGATG ACATTAAGTC TGCTCGATAT TGCTTGTGTT GTTTTATTGA TGAAGTAGTT CTCAATACGC CTTGGGGAGA GCAAAGCTAT TGGGCATCAG ACAGTTTGCT TTCTACTTTT CATAATGAAA CTTTAGGTGG TGAATATTTC TATACCTTGC TTGAAGCATC ACTTCGTCAT CCTTCTGAAA AGTGTAATTT ACTTGAGTTG ATGTATTTAT GTTTAACTCT TGGTTTTGTT GGCAAAATGA GAGTTGAGCC TCAAGGCGAT CAAAAATTAG AAGCATTACG TGAAAAAACG TATTTAGCCA TTCAATCTTG CAAAGGCGAT TTTCATAGAG AGTTATCACC AGGATGGCGA CAGAATATTG TCCCTAATTT AACTTTTCAG CAGCCATTTC CTTTATGGGT TATCGGGGCA TTATTTGGTG TGGTTACTTT ATTTATCTAT ATGGGTTTTA GTTACAGCAT CAACAATTAC TCATCAGAAG CTTATAAAGA ATTGACTTCG ATTGTGCCTT GGGAAAAAAC CATTGATGCG CAACAACAAA TTAGTCGTGA TGAAGCATTA TTACTGCAAC AACTATTACA AACCGAAATT GGCAAAAATT TACTCGAAGT AGAACAATTA AGCGATCGTG TGAGGATCCG CATTGGGGCG ACTGAACTTT TTGCTTCTGG TAACACTCAA CCTCGGTCTG ATTTTGAAGC GATTTTAGCC AAAATAGCTC TGACGCTAGA GAGTACCGAT GGCAAAATTT TGATCACCGG TCATACCGAT GATGAACCCA TTTTTACCTC TAAATATCCA TCAAATTGGC ATCTTTCATT AGCAAGAGCA ACGTCGATTG CGAACGTTCT GGCTAATAGC GCATCGCTAA GTGGCCGATT GTGGCCTGAA GGTCGTGGTG AGTCTGAGCC CCGTGTGGTG AATGACAATG AACAGAACCG CGCGTTAAAT CGTCGAATCG AAATCGACTT ATTGTTTTAG
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Protein sequence | MNDKTIVKPR PGKGSGMAAN KTKVDDDSQK TLIQDHRADN RDNRSQLSLS QNPIVDFAGT LLSICTQLRN STEHDDVNTL RVHCVELIKN YEQQLRNANL ASDDIKSARY CLCCFIDEVV LNTPWGEQSY WASDSLLSTF HNETLGGEYF YTLLEASLRH PSEKCNLLEL MYLCLTLGFV GKMRVEPQGD QKLEALREKT YLAIQSCKGD FHRELSPGWR QNIVPNLTFQ QPFPLWVIGA LFGVVTLFIY MGFSYSINNY SSEAYKELTS IVPWEKTIDA QQQISRDEAL LLQQLLQTEI GKNLLEVEQL SDRVRIRIGA TELFASGNTQ PRSDFEAILA KIALTLESTD GKILITGHTD DEPIFTSKYP SNWHLSLARA TSIANVLANS ASLSGRLWPE GRGESEPRVV NDNEQNRALN RRIEIDLLF
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