| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2366 |
|---|
| Symbol | |
|---|
| ID | 4279277 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2818268 |
|---|
| End bp | 2819056 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638135162 |
|---|
| Product | virulence protein, SciE type |
|---|
| Protein accession | YP_751049 |
|---|
| Protein GI | 114563536 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAA TTCAACAAAT GCTACAGAGC GGCCAACTAC AAGATGCAAT TCAGTTAGTT
GAGACACAAT TAAAAGACGA CCCGATGAAT ATTGACTTAA AAGGTCAACA TGTTGAGTTG
TTGTGTATTA ATGGTGAACT TGAGCGTGCA GACAAACAAT TAAACTTTTT AGTGCAAAAG
CATCCCGACT TTTTAATTGG CGCAGCAAAT TTACGTCAGC TGATCCGTGC TGAACAAGCC
CGACAAGATT TTATGGCGGG CAAAGCTGTA CCACAACTTT TTGCTGAGTC TGATGCGCAC
GTTGAAGCAT TAATGAAATT ACGTTTAGCA ATGGTTGATG CTCAAGATGA TGTGACTCAG
TGTGCAAACA GCCTTGAAAC TCTGCGTCCG GAAATAAACT TAGTATTAAA TGATATCACT
CATCAAGAAA TTCGTGATTT AGATGACACT TTAGGTGGTT TCATCGAAAT TTTTGGTACT
GACGGCAATT TTTATTTAGC GCAGTTATCT GAAATTGATT ATATCAATTT TAAACCTGTA
ACTTCATTAC TGGAAATGGT TTGGCGCCGG GTTGATCTTG CCATTAAAAA TGGACCAAGT
GGTGAAGCGC ATATTCCAAT GATTTATGGT GGCAGTGAAA CTGATGCGCA AAAACTGGGA
CGAGAAACCG ATTGGCATGA AATCGCGACT AATGTTGTTG CTGGCAAGGG CTTAAAGATG
TGGTTTGTCG ATGATAATGC TATCGCATTA AATCAAATAA CTAAAGTTAC GACTCCAGTG
TTGCAGTAG
|
|---|
| Protein sequence | MKQIQQMLQS GQLQDAIQLV ETQLKDDPMN IDLKGQHVEL LCINGELERA DKQLNFLVQK
HPDFLIGAAN LRQLIRAEQA RQDFMAGKAV PQLFAESDAH VEALMKLRLA MVDAQDDVTQ
CANSLETLRP EINLVLNDIT HQEIRDLDDT LGGFIEIFGT DGNFYLAQLS EIDYINFKPV
TSLLEMVWRR VDLAIKNGPS GEAHIPMIYG GSETDAQKLG RETDWHEIAT NVVAGKGLKM
WFVDDNAIAL NQITKVTTPV LQ
|
|---|
| |