| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2260 |
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| Symbol | mnmA |
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| ID | 4279172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2706082 |
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| End bp | 2707200 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638135057 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_750944 |
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| Protein GI | 114563431 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACATCAC TCAACCCTAC TTCAAACGGT AAAAAAGTCA TTGTCGGCAT GTCCGGCGGT
GTGGACTCTT CAGTATCAGC TTACTTGTTA ATGCAGCAAG GCTTCGAAGT TGAAGGTCTA
TTTATGAAGA ACTGGGAAGA AGACGATACT GATGAATATT GCGCTGCAGC AGATGATTTA
AAAGATGCTC AAGCGGTTTG CGACAAGCTA GGTATAAAAA TGCACACCGT CAATTTTGCT
GCCGAATACT GGGATAACGT ATTCGAATAT TTTTTAGCAG AATACAAGGC CGGTCGAACG
CCCAACCCCG ATATCATGTG TAATAAAGAA ATCAAATTTA AAGCATTTCT TGAATTTGCC
GACGACATTT TAGACGCCGA TTATATCGCC ATGGGCCATT ATGTTCGTCG TCGTGATAAT
AGCGATGGCA GCGTTGAAAT GCTCCGCGGG GTTGATGGCA ATAAAGATCA AAGTTACTTC
TTATACACGT TAAGCCACGA ACAAGTTGCC CGTAGTTTGT TCCCTGTCGG TGAACTTGAA
AAACATCAAG TACGCGAAAT AGCCCAAAAA TTGGGACTCA TTACTCACGA CAAAAAAGAC
AGCACTGGCA TCTGTTTTAT TGGTGAACGT AAGTTTACTG ACTTCTTAGC AACTTATTTA
CCTGCTCAGC CTGGTGATAT CGAAACATCG GAAGGTGAAG TGATTGGTAC ACATCAAGGG
TTGATGTATC ACACACTTGG ACAACGCAAA GGCCTTGGCA TTGGTGGACT GAAAAACAGC
AATGAAGACC CATGGTATGT GGTCGAAAAA GATTTAGTCC GTAATGTGCT TATTGTGGCG
CAAGGCGGCA ATCACCCTCG CCTAATGTCA ACAGGTATGA CCGTCAATCA GCTCCATTGG
GTTGATCGTA CGGGGCCAGC CAATAACAGC ACGATTACAG TAAAGACCCG TTATCGTCAA
CGTGATGTTG GATGTACCCT CACCTATGAC GACGCAGACA ATATTACGGT GATGTTTGAT
GAACCTGTTG CTGCTGTTAC GCCTGGGCAA TCAGCGGTGT TTTATGATGG TGACATCTGT
TTAGGTGGCG GCATAATCGA TACTTTAATT CGAGGGTAA
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| Protein sequence | MTSLNPTSNG KKVIVGMSGG VDSSVSAYLL MQQGFEVEGL FMKNWEEDDT DEYCAAADDL
KDAQAVCDKL GIKMHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLEFA
DDILDADYIA MGHYVRRRDN SDGSVEMLRG VDGNKDQSYF LYTLSHEQVA RSLFPVGELE
KHQVREIAQK LGLITHDKKD STGICFIGER KFTDFLATYL PAQPGDIETS EGEVIGTHQG
LMYHTLGQRK GLGIGGLKNS NEDPWYVVEK DLVRNVLIVA QGGNHPRLMS TGMTVNQLHW
VDRTGPANNS TITVKTRYRQ RDVGCTLTYD DADNITVMFD EPVAAVTPGQ SAVFYDGDIC
LGGGIIDTLI RG
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