Gene Sfri_2209 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2209 
Symbol 
ID4279121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2643293 
End bp2645113 
Gene Length1821 bp 
Protein Length606 aa 
Translation table11 
GC content40% 
IMG OID638135006 
ProductAsmA family protein 
Protein accessionYP_750893 
Protein GI114563380 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2982] Uncharacterized protein involved in outer membrane biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTAG TAAAGTGGTT GTTAGCGATA GTGCTAACCA TAGTGGTCGG TATAACCGTC 
TACCTCACAA TGTTTTTCGA TTTAAATAAT TTTAAACCGC AAATTGTTGA TGCGGTAAAA
AAACAAACTG GCCGTGACTT ACAAATCAGC CAAGATTTAA GCTGGAGCGT GTTTCCATCT
TTAGGCATCA AGCTCGGGGG CATTTCGTTA TCGAACCCAA ATGGGTTTAC ACCCGCTGCG
ATGCTTGATG TTAATGAGGC CGTGGCCAAT GTGGCGTTGA TGCCATTGTT TAGCCAACAA
ATAGAAGTTG ATTTATTAAA GCTAGATGGC TTAACACTTA ACTTAGTCAC TCAAAAAGAC
GGCAAGACTA GTTTTGATGG TTTGACTGCT GAAACATCGG CAGAAAAACC ACAATCAACC
TCAAGCAATT CAGAGGCAAT GTCTTTACAG ACGTTAGATA TTGGCGGTAT TGAACTTACC
AATACGAATA TCAATATTAT TGATATGGCC AGCAATACGA CTCAAACTTT CAGTCTAAAA
AGTTTTACTT TAGGACAGTT CAGCCTAGGA CAATTCGCTG ATTTTGCTTA CGAGTTTTCA
GCGACACTGC CTGATATGCA GTTAGCGTCA TCTGGACAAG GCAAAATTAA AGTCGACCAA
GCATTACAGA ATGTCACGAT TAATGATTTT GACATGGTGC ATAAAGCCCA AGGCGATAGT
TTGCCAGGCA AAGCGATTAC CGCTGAGCTG AGTACACAAA TGAAGATGGC ATTAGATGCA
AAAACCATTG AGCTGCAATT GACTAAAATG TCAGCTATGG ACTTAGCCGC CACTGGCGAT
ATTAAGATCA ACTATGGTAA TAGCATTCCT AAAATTGCGA TGAATCTTGA TGTTGGTGAT
ATTGATGTCG ATGCATTACT GCCAAAGCAA GAAGGCGATG CCAAAGAAAA TGAGGCAACT
CCTGAAACTG CACCAAGCAA AGAACCTGAT TTGTCGGGAT TAAAGAGTGT CGATTTAACC
CTAAACTTAA CCGCTAAATC AATTAAAGTT AGTAATATGC TAACGCAAAA TTGGCAAATG
AAAATGGCCG TTAATAAAGG CGTATTAACG TTGTCGTTGC TGACTGCCGA TTTATATGAA
GGTAAGCTAG CACTTAGCGC TAAGCTTGAT GGTCGTAAAG CGGTACCAAC TTATGTGTTT
GATAAAAAGT TGACTGGGGT GCAAATTCGT CCGTTATTAA CCGATGCCGC TGAAGTAGAT
TTGCTTTCTG GAACAGCGAG TTTTGAAGTT AAAGGTAGTG GTGCCAGTTT GATTGTCGAT
AATCTTAAAA ACAATCTTAA TGCCGTGGGT AAGTTTGAAG TAGCAGATGG ATCATTGTAT
GGAGTTAACA TTCCACAGAT GATCCGTAGC GCACAGCAAA AGCTGAAAGG TGATTTATCG
GCGGATAAGA AAGAAGAGTT GAAAACCGAT TTTACCAGTT TAACTGGAAG TTTCACCATG
AAAGATGCTG TTGTAACTAA CCCTGATTTA GCGATGGCTT CACCGTTAAT TCGCTTAAAT
GGTAAAGGTA CGGCAAACAT TGCTACTGAA GCGTTAGATT ACACCTTAAC AACCAGTGTC
GTTGGGTCAT TATCAGGACA AGGCGAACCT GCTGATGAGT CTCTTAAAGG TATCGACATT
CCGTTAACTA TTAAAGGTAC TTTCCAAGAG CCTAAGTTTG GCATTGATAC CAAAGCGTTA
TTGGAAGGCC AATTTAAAGA TGAAGCAGAT AAAGCCAAAG AAAAGCTAAA AGAAGGATTG
TTTAAGAAGC TTGGAATTTA A
 
Protein sequence
MKVVKWLLAI VLTIVVGITV YLTMFFDLNN FKPQIVDAVK KQTGRDLQIS QDLSWSVFPS 
LGIKLGGISL SNPNGFTPAA MLDVNEAVAN VALMPLFSQQ IEVDLLKLDG LTLNLVTQKD
GKTSFDGLTA ETSAEKPQST SSNSEAMSLQ TLDIGGIELT NTNINIIDMA SNTTQTFSLK
SFTLGQFSLG QFADFAYEFS ATLPDMQLAS SGQGKIKVDQ ALQNVTINDF DMVHKAQGDS
LPGKAITAEL STQMKMALDA KTIELQLTKM SAMDLAATGD IKINYGNSIP KIAMNLDVGD
IDVDALLPKQ EGDAKENEAT PETAPSKEPD LSGLKSVDLT LNLTAKSIKV SNMLTQNWQM
KMAVNKGVLT LSLLTADLYE GKLALSAKLD GRKAVPTYVF DKKLTGVQIR PLLTDAAEVD
LLSGTASFEV KGSGASLIVD NLKNNLNAVG KFEVADGSLY GVNIPQMIRS AQQKLKGDLS
ADKKEELKTD FTSLTGSFTM KDAVVTNPDL AMASPLIRLN GKGTANIATE ALDYTLTTSV
VGSLSGQGEP ADESLKGIDI PLTIKGTFQE PKFGIDTKAL LEGQFKDEAD KAKEKLKEGL
FKKLGI