Gene Sfri_2185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2185 
Symbol 
ID4279097 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2611755 
End bp2614580 
Gene Length2826 bp 
Protein Length941 aa 
Translation table11 
GC content39% 
IMG OID638134980 
Productdiguanylate cyclase 
Protein accessionYP_750869 
Protein GI114563356 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.260855 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAAATTTA TACCTTGGAT ATTAGCAATG TTATTTGCGT GGATATCATT ACCCGCGCAG 
GCAATACATT CAGATAAAAC CGAACTGTCA GTAGATCATT TACCCTTAGT CATCGTGATG
GGTGAAGATA CTTATCCATT TGAATATTTG GATGAGAAGG GCACTCCAGC AGGGATTTTG
GTCGATTTAT GGCGCGAGTG GTCCATCATT ACTGATACCA AGGTACAATT TGTGTCTCGG
CATTGGCAAC AGTCACTTGA TCAGCTGGAA CAGAAAAAAG CTGACATACA TATTGGTATG
TCTCAAAACC AAGCACGGTT AAAAAAGTTC GATTTTGCAA AACCATTTAC TTCCTTAAAT
ACCTATTTAT ACATTCATAA GTCGCTGAGT AGTAAAAAAC AAATTAGCGA TTTGGTTCCC
TATCAAGTCG GTATCGTCAG TGGATCATCC CATGAAGCAA CATTATTAGC GCTAGAACCT
AAGCTTAGTT TTAAGCGTTA TCAAAATCGT GAACAATTAT TACAAGCCGC CGTAAAAGGT
GAGTTATTTG TTTTTGCCGG TATTGAAGGA TACCAGCGCA ATTTGGCGCT TGAACAAGAC
ATAGCCGCAA ACTTTTACAG TTCATCGCGT ATTCTCATCA AAAAAATCAA CCTAGCCCCA
GCGGTGGTAA AAGGGGATTT GGATCTTCTC AACAAGATTA ACCAGGGTTT TGAATTAATA
CCTGCAAAAG TTATTCAGCA AATAGAGCGG CGGTGGTTAG GTTATCATCG ACAAACTACA
GGGGTGATTA TCGCGATGCA AAACGGTGTC GAACCTTATG CGGATATCGG TGCTGATGGA
TTACCACATG GAATGTTGGT GGATTTGTGG ACTTTATGGT CTGAAAAAAC CGGTATCAAT
ATTGATTTTG TCGCTGGTGA CATGAGTAGT ACAATTGATG ATGTTAAACG TGGTGTCGCA
GATGTTCATA TTGGTTACCC TGAAAGCCAA GATATGCGCA CAGGTTTGAA ACAAGCGTGG
CATATTATTT CGGTTAAAAG CCGTTTTTTT AGCTCAAACT TAACATTAAA TAACATTGAA
GACATTGTGA TGCGGATTGG CGTTTATCCT ACAGCGCCTT ATATCAGTGA TATTAAAAAA
GCTTTTCCTA AGGCGCAATT ACGCTTTTAT GATTCATTAG ATGCCATGGT TAAAGCCGCA
CGTAACGATG AAATCAGCGG TTTTGTTTCA TCTGCAGCAA TGACGTCTCA TTATTTATTG
GCTAATAAGT TGTGGGCAGA ATTTCGTCAA TATACTGATA TCGAATTTTC GACAGATATG
TATGTATTAA CCCGTATTGA CGACAGTGGT TTAGCCGATC GGATTCAAGC TGGATTTAAT
TTAATTTCTG TTGAAGAACA AGTTCAGGTT GAGCGTAAAT GGTTAATTAA TCCAGATGAC
CGCTTTTTTG CGAATTCTGC CAATAAAATA AAATTAACAA CACAACAAAA GCAATATGTT
AGTAGTTTAG GCGCCATTAA AATGGGTTAC CTGAAAAATT GGGCCCCTAT GGAATTCCAG
GGCAAAAATG GTGAGTTTTT AGGGGTGAAT GCAGACATTA AAAACTTACT AGTCAAGCAA
CTCAATTTAA CTATTATCCC AGTGGCTTAC GATGATTTTG GTAACATGAT GAATGACCTA
ATTAAAGGTG AAATTCATTT AGTGGCCAGT ATGGCTAAAA CGGTTGAGCG CGAAAACAAA
CTAGCATTCT CTTTAGCATA TTGGCCATCA CCTTGGGCGA TAGTCACGTC GCTAAGCCAA
CCTCCCATTT TTAATATTTC ACAGGTAACA GGTAAACGTC TGGCTGTTGT TGACGGTTAC
CATATTGTCG ATCAGCTTCG CCAACAATAC CCAGGTATAA AATTAGTGCC CGTTGCAGAC
ACTAAACAAG GTATGGAAGC CGTTATCACA GGTAGCGCGG ATATGTTTGT TGAACAAGTT
GCAACATTGG CGACTACGTT AAAAGGTGGC CAATATCCGA GTTTGAAAAT GTCTTTATTA
GCTGAGTTAA CCGAGCAGCA CAGCCACATA GGGTTATTCC CAGGCGTGAA AAATTTAGTG
CCTTTGATTG ATAGAGTCAT TGCGACTATC GATGAAACCG AACAACAGAA CATGTACCAA
AAATGGGTCT CGCTAGATCT TAATAGTGAC ACATTACGCT ATCAACGGTG GTTGAAAATA
TTAGTGATTG GTTTGTTAAT TATCACCCTA ATAGCCATTG TAATATTAAT GTCGAATCGG
CGCCTAAATG TCGAAATTCA AAAACGGCTT AAAGCTGAAG AAAATCTTCG ATTTATGGCC
AATCATGATA ATTTAACCGC ATTGCCAAAT CGCAGTTTAC TTGACGATAG ATTAGCGCAA
GCCACATTGA CTCATCATCG AGATAAATCA AAATTTGCAC TGTTGTTTAT TGATTTAGAT
GGTTTTAAAG CAATAAATGA TCAATATGGT CATCATGTTG GGGATAAGTT ATTACAGCGT
ATCGCCCTGT TATTAGGCAA GCATGTAAGA GAATCTGACA CGGTTGCTCG CTTTGGTGGC
GATGAGTTTG TGGTGTTATT AAATCATATC GAAGCCAAAG AAAATGCCCG TCAAGTGGCT
GAAAATATCT TATTAGGATT AAAGAAACCG TTATTAATCG ATGATATTAA TGTCTCTATT
TCGGCCAGTA TTGGTATCGC TATTTTTCCT AATGATGCCG ATACCGCTGC TTCATTATTG
AAAAAATCAG ATCAGTTAAT GTATCAAGCT AAAAAGGTGG GTGGTCATCA ATATAAAATG
AGCTGA
 
Protein sequence
MKFIPWILAM LFAWISLPAQ AIHSDKTELS VDHLPLVIVM GEDTYPFEYL DEKGTPAGIL 
VDLWREWSII TDTKVQFVSR HWQQSLDQLE QKKADIHIGM SQNQARLKKF DFAKPFTSLN
TYLYIHKSLS SKKQISDLVP YQVGIVSGSS HEATLLALEP KLSFKRYQNR EQLLQAAVKG
ELFVFAGIEG YQRNLALEQD IAANFYSSSR ILIKKINLAP AVVKGDLDLL NKINQGFELI
PAKVIQQIER RWLGYHRQTT GVIIAMQNGV EPYADIGADG LPHGMLVDLW TLWSEKTGIN
IDFVAGDMSS TIDDVKRGVA DVHIGYPESQ DMRTGLKQAW HIISVKSRFF SSNLTLNNIE
DIVMRIGVYP TAPYISDIKK AFPKAQLRFY DSLDAMVKAA RNDEISGFVS SAAMTSHYLL
ANKLWAEFRQ YTDIEFSTDM YVLTRIDDSG LADRIQAGFN LISVEEQVQV ERKWLINPDD
RFFANSANKI KLTTQQKQYV SSLGAIKMGY LKNWAPMEFQ GKNGEFLGVN ADIKNLLVKQ
LNLTIIPVAY DDFGNMMNDL IKGEIHLVAS MAKTVERENK LAFSLAYWPS PWAIVTSLSQ
PPIFNISQVT GKRLAVVDGY HIVDQLRQQY PGIKLVPVAD TKQGMEAVIT GSADMFVEQV
ATLATTLKGG QYPSLKMSLL AELTEQHSHI GLFPGVKNLV PLIDRVIATI DETEQQNMYQ
KWVSLDLNSD TLRYQRWLKI LVIGLLIITL IAIVILMSNR RLNVEIQKRL KAEENLRFMA
NHDNLTALPN RSLLDDRLAQ ATLTHHRDKS KFALLFIDLD GFKAINDQYG HHVGDKLLQR
IALLLGKHVR ESDTVARFGG DEFVVLLNHI EAKENARQVA ENILLGLKKP LLIDDINVSI
SASIGIAIFP NDADTAASLL KKSDQLMYQA KKVGGHQYKM S