Gene Sfri_2175 details

Gene Information

• Locus tag: Sfri_2175
• Symbol: rnfD
• ID: 4279087
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 2602690
• End bp: 2603742
• Gene Length: 1053 bp
• Protein Length: 350 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638134970
• Product: electron transport complex protein RnfD
• Protein accession: YP_750859
• Protein GI: 114563346
• COG category: [C] Energy production and conversion
• COG ID: [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD
• TIGRFAM ID: [TIGR01946] electron transport complex, RnfABCDGE type, D subunit

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.164146
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATTTA AAATTGCCTC ATCTCCACAT GTCAGCACAA CGTTACACAC CAATACGGTA 
ATGAAGCGTG TGGCGCTATG CCTTATTCCA GGAATTGCAG TACAAAGCTA TTATTTTGGT 
TATGGCACGT TAGTTCAATT ATTACTCGCA ATTACGGTGG CTTATTTAGC AGAAGCGGCG 
GTAATGAAAC TACGCAATAG AAATATTACC GCCACCTTAA CGGATAACAG CGCATTGGTT 
ACCGCAAGCT TACTTGCGGT TGCAATCCCG CCATTAGCGC CTTGGTGGTT AATTGTCATA 
GGAACATTAT TTGCTATCGT TATTGTTAAA CAACTTTACG GTGGGTTGGG TAATAATGTC 
TTTAATCCGG CTATGGCCGC ATACGTCCTG TTACTGATTT CATTTCCGGT ACAAATGACG 
TCTTGGGTTG CCCCTCAAAC CTTAACGGTC AATTACGCTG ATATGTTGCA TACCTTCAAC 
AGTATTTTTC AATTAAATGC AGGTTATGCA GCAGATTTTT TCCATTTGGC GATTGATGGC 
ACCACCATGG CAACGCCGCT AGACACATTA AAAACAGACC TTTCTATGGG GCTTACCACA 
ACAGAAAGTA TGACTAAAAC CATCTTCTCT GGCAGTGTTG GCGAAGGTTG GTTTTGGGTC 
AATATGGCCT ATCTTGTGGG TGGCCTGGTG ATGCTAAAGC TTAAGGTGAT ACGCTGGCAC 
ATTAGCGGCG CTATTGTGCT GACATTATTT GTCTGTGCCA GTATTGGTTT TTTGATCAGC 
CCAGATACCT TCGTTAGCCC GATAATGCAT TTATTTTCGG GAGGAACCAT GCTGGCGGCA 
TTTTTCATTG CCACAGATCC CGTTACCGCT GCAACAAGCC CTAGAGGTCG ACTTATTTTT 
GGTGCCATGA TCGGCTTACT CATATACTTA ATACGAACAT TTGGTGGCTA TCCTGATGCT 
GTCGCATTCG CGGTGTTATT AGCCAATATG TGCGCACCAT TTATTGATTA TTATGTGCGC 
CCACGCAGTT ATGGTCATCG AGTAGGAAAT TAA 

 

Protein sequence

MAFKIASSPH VSTTLHTNTV MKRVALCLIP GIAVQSYYFG YGTLVQLLLA ITVAYLAEAA 
VMKLRNRNIT ATLTDNSALV TASLLAVAIP PLAPWWLIVI GTLFAIVIVK QLYGGLGNNV 
FNPAMAAYVL LLISFPVQMT SWVAPQTLTV NYADMLHTFN SIFQLNAGYA ADFFHLAIDG 
TTMATPLDTL KTDLSMGLTT TESMTKTIFS GSVGEGWFWV NMAYLVGGLV MLKLKVIRWH 
ISGAIVLTLF VCASIGFLIS PDTFVSPIMH LFSGGTMLAA FFIATDPVTA ATSPRGRLIF 
GAMIGLLIYL IRTFGGYPDA VAFAVLLANM CAPFIDYYVR PRSYGHRVGN