| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2156 |
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| Symbol | |
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| ID | 4279068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2567169 |
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| End bp | 2568746 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134946 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_750840 |
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| Protein GI | 114563327 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00566715 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGACGA ATACCACATC TCACTCTACA ACTCATTCAA CTATATCTAG TCAAGCTGTC
GTGATTAAAC AAGCTGACTT TATTGAAAGT ATTGCTGATT CTCTGCAATA CATTTCGTAT
TACCATCCCA AAGACTTTGT TGATGCGATG ACCAAAGCTT ACGAGCGTGA AGAAAGCGCT
GCCGCTAAAG ACGCCATTGC TCAAATTCTG ATTAACTCCC GCATGTCAGC CGAAGGCAAA
CGCCCTTTAT GCCAAGACAC TGGAATTGTC ACCACCTTTG TTAAAATTGG TATGTCTGTT
CAGTGGGATA AAACTGACAT GACAGTTCAA GAAATGGTCG ATGAAGGTGT ACGTCGTGCT
TACACCAATC CAGATAATCC ATTACGTGCA TCAATAGTGT CAGATCCTGC CGGTGCGCGT
AAAAATACTA AAGACAACAC ACCATCAGTG GTTCATATTG ACATGGTTGC TGGTAATCAA
ATAGAAGTGA TGATTGCAGC CAAAGGTGGT GGGTCGGAAA ATAAATCCAA AATGGCCATG
CTTAATCCGT CAGACGATAT CGCCGCTTGG GTAGAAAAAA CATTACCAAC AATGGGCGCG
GGCTGGTGTC CACCGGGTAT GTTAGGCATA GGTATCGGTG GTACTGCTGA GAAAGCGGCC
GTTCTGGCCA AAGAATCATT AATGGACCCT GTTGATATTC ATGAGTTGAT GGCTCGTGGT
GCAGAGACCA CAGAAGAAAA GCTTCGTTTA GACATTTTTG AACGGGCAAA TAACTTAGGC
ATAGGCGCTC AAGGGTTGGG CGGATTAACC ACAGTATTAG ACGTTAAAAT TAAATCTGTA
CCGACTCATG CAGCGTCTAA ACCAGTAGTG ATGATCCCTA ACTGCGCAGC AACGCGCCAT
GTGCATTTTC ATTTAGATGG CACTGGTCCA GTCGATTTAG TACCACCATC GTTGTCTGAT
TGGCCTGAAA TTACTCGTGA AGCGGGAGAA AACACTCACC GTGTCAATTT AGATACGGTC
ACTCAAGCTG AAATCGAAAC TTGGAAGAGT GGTGATACCT TATTACTCAA CGGTAAAATG
CTGACTGGCC GCGATGCAGC TCATAAACGG ATTCAAATGT TGCTTGAATC TGGTGAAGGT
TTACCAGCAG GTGTCGATTT TACCGGTAAG TTTATTTATT ACGTTGGCCC AGTCGATCCA
GTCGGTGATG AAGTGGTTGG CCCTGCAGGC CCAACAACGG CAACCCGTAT GGATAAGTTC
ACTGACATGA TGTTAGACCA AACAGGCCTA ATGGGCATGA TTGGTAAGTC TGAGCGTGGT
CCTGAAACGG TTGCTTCAAT TAAAAAGCAC AAAGCAGTCT ATTTAATGGC TGTTGGCGGC
GCTGCATACC TAGTGTCGAA AGCGATTAAG AAATCACGTG TTGTCGCATT TGAAGATTTA
GGCATGGAAG CGATTTACGA ATTTGATGTG CAAGACATGC CAGTGACCGT GGCGGTTGAT
ACCAATGGTG TTAATGCGCA CGAAACTGGC CCAGCGATTT GGAAAATTAA CATCGCTAAC
AGTAAAGCTA ATAAGTAA
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| Protein sequence | MSTNTTSHST THSTISSQAV VIKQADFIES IADSLQYISY YHPKDFVDAM TKAYEREESA
AAKDAIAQIL INSRMSAEGK RPLCQDTGIV TTFVKIGMSV QWDKTDMTVQ EMVDEGVRRA
YTNPDNPLRA SIVSDPAGAR KNTKDNTPSV VHIDMVAGNQ IEVMIAAKGG GSENKSKMAM
LNPSDDIAAW VEKTLPTMGA GWCPPGMLGI GIGGTAEKAA VLAKESLMDP VDIHELMARG
AETTEEKLRL DIFERANNLG IGAQGLGGLT TVLDVKIKSV PTHAASKPVV MIPNCAATRH
VHFHLDGTGP VDLVPPSLSD WPEITREAGE NTHRVNLDTV TQAEIETWKS GDTLLLNGKM
LTGRDAAHKR IQMLLESGEG LPAGVDFTGK FIYYVGPVDP VGDEVVGPAG PTTATRMDKF
TDMMLDQTGL MGMIGKSERG PETVASIKKH KAVYLMAVGG AAYLVSKAIK KSRVVAFEDL
GMEAIYEFDV QDMPVTVAVD TNGVNAHETG PAIWKINIAN SKANK
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