| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2123 |
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| Symbol | rpsA |
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| ID | 4279035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2523852 |
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| End bp | 2525519 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638134912 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_750807 |
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| Protein GI | 114563294 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000359988 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGAAT CTTTTGCTGA TCTATTTGAA CAATCCCTTC AAACCCTAGA GTTCCGTCCA
GGTTCTATCG TCCGTGGTAC AGTTGTTGCC ATCGAAAACG GTATGGTACT TGTTGACGCT
GGTCTTAAGT CTGAAAGCCC AATCAATGCT GACGAATTCA AAAACGCACA AGGCGTTTTA
GAAATCCAAG TAGGTGATGA AGTTGACGTA GCCCTTGACT CTGTTGAAGA TGGTTTCGGT
GAGACTCAAT TGTCTCGCGA AAAAGCTAAG CGTCATGAAG CTTGGATCGT TCTAGAAAAA
GCGTACGAAG ATGCTGAAAC TGTAATCGGT ATCATCAATG GTAAAGTTAA AGGTGGTTTC
ACTGTTGAAT TAAACGGTAT CCGTGCCTTC TTACCAGGTT CTCTAGTTGA CGTGCGCCCA
GTTCGCGACA CAGCTCACTT AGAGTACAAA GAATTAGAAT TCAAAGTTAT CAAGCTTGAC
CAGAAGCGCA ACAACGTTGT TGTTTCTCGT CGTGCAGTTA TCGAATCTGA AAGCAGTGCT
GAACGTGATA CTCTTCTTGA GAATCTACAA GAAGGTCAAG CTGTTAAAGG TATCGTTAAA
AACCTTACTG ACTACGGTGC ATTCGTAGAC TTAGGTGGTG TTGACGGTCT TTTACATATC
ACTGATATGG CTTGGAAACG TGTTAAGCAC CCATCTGAAA TCGTTAATGT TGGTGACGAA
ATCAACGTTA AAGTTCTTAA GTATGACCGT GAGCGTACTC GCGTATCACT AGGTCTTAAG
CAACTTGGCG AAGATCCATG GTTAGAAATC AGCAAGCGCT ACCCAGAAAG CACTAAGCTT
ACTGGTCGCG TAACTAACTT AACTGACTAC GGTTGCTTCG TCGAAATCGA AGAAGGCGTT
GAAGGTTTAG TACACGTTTC TGAAATGGAT TGGACTAACA AGAACATTCA CCCATCTAAA
GTTGTTAACT TAGGTGATGA AGTTGAAGTG TTAGTATTAG ACATCGATGA AGAACGTCGT
CGTATTTCTC TAGGCCTTAA ACAGTGTAAA GTTAACCCAT GGGATGACTT CGCAACTCGT
TACAACAAAG GCGACAAAGT ATCTGGTAAG ATCAAGTCAA TCACTGACTT CGGTATCTTT
ATCGGTCTTG ACGGTGGAAT CGATGGTCTT GTTCACTTAT CTGACATTTC TTGGAACGGT
ACTGGCGAAG ACGCAGTTTC TGAATACAAG AAAGGCGATG AGATCCACGC TGTAGTTCTT
TCAGTAGACC CAGAGCGTGA GCGCATCAGC CTAGGTGTTA AGCAAACTGA AGATGATCCA
TTCAACGCAT ACTTAGCTGA CAAGAAGAAA GGCACCGTAG TTCACGGTAC TGTTTCTGCT
GTTGACGCAA AAGGTGTTAC AGTTGAATTA GCAGAAACAG TTGAAGGTTA CATTCGTGTA
GCTGACATCT CTGCAGACCG CATCGAAGAC GCATCTACTG TATACTCAGT TGGTGATGCA
ATCGAAGCTA AGTTCATGGG TGTAGATCGT AAGAACCGTT CTATCAGCTT ATCTATCAAA
GCGAAAGATG AAGCTGAACA GAAAGAAGCG ATCGCTACTT TGAACAAGCA AGACGATGTT
GTAATGAGCA GCGCAATGGC TGAAGCCTTC AAAGCAGCTC GTAAGTAA
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| Protein sequence | MTESFADLFE QSLQTLEFRP GSIVRGTVVA IENGMVLVDA GLKSESPINA DEFKNAQGVL
EIQVGDEVDV ALDSVEDGFG ETQLSREKAK RHEAWIVLEK AYEDAETVIG IINGKVKGGF
TVELNGIRAF LPGSLVDVRP VRDTAHLEYK ELEFKVIKLD QKRNNVVVSR RAVIESESSA
ERDTLLENLQ EGQAVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE
INVKVLKYDR ERTRVSLGLK QLGEDPWLEI SKRYPESTKL TGRVTNLTDY GCFVEIEEGV
EGLVHVSEMD WTNKNIHPSK VVNLGDEVEV LVLDIDEERR RISLGLKQCK VNPWDDFATR
YNKGDKVSGK IKSITDFGIF IGLDGGIDGL VHLSDISWNG TGEDAVSEYK KGDEIHAVVL
SVDPERERIS LGVKQTEDDP FNAYLADKKK GTVVHGTVSA VDAKGVTVEL AETVEGYIRV
ADISADRIED ASTVYSVGDA IEAKFMGVDR KNRSISLSIK AKDEAEQKEA IATLNKQDDV
VMSSAMAEAF KAARK
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