| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2031 |
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| Symbol | |
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| ID | 4278943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2403071 |
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| End bp | 2404432 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638134818 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_750715 |
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| Protein GI | 114563202 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATAATA CAGGTTTTCA GATTTCACGC TTGATAAAAT TGGCGCTTCC AGTGCTGATA
GCCCAAGTGA CACAAACCAT GATGGGTTTT ATTGACACTG TGATGGCTGG CCGTGTGAGT
GCAGTGGATA TGGCAGCCGT CGCCGTTGGG ACCAGTTTGT GGCTACCTGC TATATTATTT
GTTCAAGGCT TATTAATGTC CTTTACCCCG GTGTTTTCAC AACATCACGG GGCGAATAAT
CAACAAATCA TTCCATCACT CATTTTTCAG GCGGGTTATA TTGCCATAAT TGGCGGTATT
GGGGTGATGT TGTTTCTCGC ATCTTCAACA TATTTACTCG ACTTTATGCA TTTAGAACCA
AAACTGCATG CATTAACCGT GGGTTATATA GATGCAATCT TGTGGGGAGC ACCAGCTTTC
GTTTTGTATC AGGTATTACG CGGTTGCAGT GAAGGGATTT CTTATACCAT GCCGACAATG
GTCATTGGAT TTATCGGGTT AGCCGTCAAT ATACCCGCCA ATTACGTGTT TATTTATGGT
GGTTTTGGTA TTCCCGCTAT GGGCGGTGCT GGTTGTGGTG TTGCAACTGC ATTAGTGTTT
TGGGCTATGT TAGCTGCGAT GATTATTTAC ATGTTAGTAG ATAAAACATT TAAAGAGCTC
GCGCCATTCA AGCAGTTTTT TCGTCCTCAT TTAGCCAGTA TGTGGTCCAT GACCAAATTG
GGTATGCCGA TTGCGATGGC ATTATTTTTT GAGGTAAGCC TGTTTGCTGT CATCGCATTA
TTTTTAGCGC CATTAGGCGC TAACGTCGTT GCAAGCCATC AAATCGCCCT CAACTTCTCA
TCAATTATAT TTATGTTGCC CTTATCAATT GGTATAGCAG TATCGATCCG AATTGGCTAT
TACCTTGGCC GTGGGCAACC AGAAATATCG GCCTTAGTTG CAAAAGTAGG TTTAGGGTTA
TCATTAACGC TAGCCATTTT TACCGCGATA CTAACCGTCA CCTTTAAGCA CCAAATCGCA
CTGCTATATA ATGACAACCC TGAAGTCGTT GCATTAGCTG GCAGCCTAAT GATGTTAGCT
GCGTTCTATC AGATATCAGA TTCTATTCAA GTTGTCGCAG CTGGCGCATT ACGCGGCTAT
AAAGATACTC GAAGTGCATT TTACATTACC TTGTTCTCGT ACTGGGTGAT CGGCATGACA
ACGGGTTATA TTTTAGGGTA TACGAATTTA ATTGTTGAAC CTATGGGCGC ACACGGTTTT
TGGATTGGCT TAATTGCAGG TTTAACCTCT GCAGCAATTT TGTTTGCTAT TAGATTGAAA
TACATTCAAA AGAAAGGATT TGAGTTTCAA CAGATTGGCT AA
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| Protein sequence | MNNTGFQISR LIKLALPVLI AQVTQTMMGF IDTVMAGRVS AVDMAAVAVG TSLWLPAILF
VQGLLMSFTP VFSQHHGANN QQIIPSLIFQ AGYIAIIGGI GVMLFLASST YLLDFMHLEP
KLHALTVGYI DAILWGAPAF VLYQVLRGCS EGISYTMPTM VIGFIGLAVN IPANYVFIYG
GFGIPAMGGA GCGVATALVF WAMLAAMIIY MLVDKTFKEL APFKQFFRPH LASMWSMTKL
GMPIAMALFF EVSLFAVIAL FLAPLGANVV ASHQIALNFS SIIFMLPLSI GIAVSIRIGY
YLGRGQPEIS ALVAKVGLGL SLTLAIFTAI LTVTFKHQIA LLYNDNPEVV ALAGSLMMLA
AFYQISDSIQ VVAAGALRGY KDTRSAFYIT LFSYWVIGMT TGYILGYTNL IVEPMGAHGF
WIGLIAGLTS AAILFAIRLK YIQKKGFEFQ QIG
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