Gene Sfri_1909 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1909 
Symbol 
ID4278821 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2260674 
End bp2261861 
Gene Length1188 bp 
Protein Length395 aa 
Translation table11 
GC content39% 
IMG OID638134693 
Producthypothetical protein 
Protein accessionYP_750593 
Protein GI114563080 
COG category[S] Function unknown 
COG ID[COG4394] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00034683 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGTCA ATAATTCCAA CCCATTACAT CATCATTGGG ATATCTTTTG TACTGTTGTC 
GATAACTATG GCGACATAGG TGTCACCTGG CGTTTGGCTA AGCAATTGGT AGCAGAATAT
GACATCCCCA TTAATTTATG GGTCGATGAC TTGCTGAGTT TTTCACATAT TTTACCTATG
CTAGATCCAC AAAAATCGAA ACAAACATTC AATGGAGTGA ATATATTTCA ATGGAATAAC
CCATTAGATA TAGAGTTTAC TGCTGGTAGC GTCGTTATTG AAGCATTTGC CTGTGAATTA
CCATCACAAA TAAAATCCAT AATAAATCAA TTGCATCAAC ACCCTCTTTC TCAAGCGCCT
ACTTGGTTAA ACCTTGAATA CCTCAGTGCT GAAGATTGGG TAGAGGGTTG CCATGGGTTG
CCCTCTTCAC AACCTAGTGG AGTTAAAAAG TGGTTCTACT TCCCAGGTTT TACCACTAAG
ACTGGCGGGC TTATCTGTGA GCGTGAATTA TTTAATCAAC GAGACGAATG GCAAGCTGAC
TCTACACATA AATTAGCGTT GTTCAAAAAG CTGGGTTTAC AAGGGATAAA TGCCGAAGAC
ACGGTTATCA GTGTCTTTAG TTATGAAACA CCAGCCTTAG CTGCGTTGTG TGAATTATGG
CAAGCATCTC TAACCCCAAT TCATGCTCTA ATCCCTAAAG GACGAAGTTT ACATAGCTTA
ACTAGCATAT TGCCCTGTGA CATTAAAGAT TTGATACCCG GTCAACAATT TACAATAGGT
AACTTAACCC TACATATATT ACCCATGACC GATCAAAATG GTTTCGATCG CTTGCTATGG
AGCTGTGATT TTAATATTGT GCGGGGTGAA GATTCGTTTT TACGTGCTCA ATGGGCTGCA
AAACCCTTCA TATGGCACAT TTATCCTCAA GAAGATGATT ATCACTTGGT AAAATTACAA
GCTTTTATGC AAATTTACTG CGATAATCTT GCTCCAGAAA TTGCTACTAC TTGGTCTGAG
GTGAATTTGG CCTTCAATCA GGGGAATACA AATGCAGTAG TAATGCACTG GCAACAATTA
CATTCTGTTA ATTTGTCTTT AATGCAACAT GCTATTGAAT GGCCAATTAA CGCGTTAAAT
GAAGCAGATC TTGCGAGTCG ACTAGTTCAA TTCGTTAACA ATAGCTAA
 
Protein sequence
MSVNNSNPLH HHWDIFCTVV DNYGDIGVTW RLAKQLVAEY DIPINLWVDD LLSFSHILPM 
LDPQKSKQTF NGVNIFQWNN PLDIEFTAGS VVIEAFACEL PSQIKSIINQ LHQHPLSQAP
TWLNLEYLSA EDWVEGCHGL PSSQPSGVKK WFYFPGFTTK TGGLICEREL FNQRDEWQAD
STHKLALFKK LGLQGINAED TVISVFSYET PALAALCELW QASLTPIHAL IPKGRSLHSL
TSILPCDIKD LIPGQQFTIG NLTLHILPMT DQNGFDRLLW SCDFNIVRGE DSFLRAQWAA
KPFIWHIYPQ EDDYHLVKLQ AFMQIYCDNL APEIATTWSE VNLAFNQGNT NAVVMHWQQL
HSVNLSLMQH AIEWPINALN EADLASRLVQ FVNNS