| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1899 |
|---|
| Symbol | |
|---|
| ID | 4278811 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2248823 |
|---|
| End bp | 2249524 |
|---|
| Gene Length | 702 bp |
|---|
| Protein Length | 233 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638134683 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_750583 |
|---|
| Protein GI | 114563070 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.629061 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATAA ATACCCAATT AATAATATTC GACTGCGATG GGGTTGTGAT CGACAGTGAG
GTGATTAGCG CCAAAGTGTT AATCGATAAA CTGGCTCTAT TGGGCGCCTG CATTGATATG
GCTTTTGTAC AACAGCATTT TCTAGGCTGT CAATTTTCCA CCGTCGCCGA CAAAGTACAG
CGTTTGCTCG CGATTACATT ACCTGAACAG TTTGAAGCAG AATATCGTCA GCAGTTATTG
ATTGAGTTTG AGCATAATCT GACAGTAACC GATGGTATTA AATCGATATT AGCAGACTTG
AAAGTACCGT ATTGCATAGC AACCAGCAGC AGTTTACCGC GTACAACCAG AGCATTAGAA
GTTGTAGGGT TAACGGATGT GTTTGGTTCA AATGTTTTTA CTGCCAGCGA AGTTAAGCGA
GGTAAGCCAG CACCTGATTT ATTTTTGCAT GCCGCTAAAA GTATGGGGAT TGAGCCCCAA
CATTGTTTGG TGATTGAAGA CAGCTTTTTT GGCGTCAGTG CAGCTGTAGC CGCCAAAATG
CAAGTGATTC ATTATATTGG CGGTGGTCAT ATAGTTGATA ACGTTAGTGA TGAGTTACAC
CCAGTGTCAC AAGCTTATCC AGAGATAAAT GTACTAAGTC ATTGGCGCCA TTTTAATCGT
CTAATGCCAG CGTTATGCGT TGATACTGAA TATAAGGGAT AA
|
|---|
| Protein sequence | MNINTQLIIF DCDGVVIDSE VISAKVLIDK LALLGACIDM AFVQQHFLGC QFSTVADKVQ
RLLAITLPEQ FEAEYRQQLL IEFEHNLTVT DGIKSILADL KVPYCIATSS SLPRTTRALE
VVGLTDVFGS NVFTASEVKR GKPAPDLFLH AAKSMGIEPQ HCLVIEDSFF GVSAAVAAKM
QVIHYIGGGH IVDNVSDELH PVSQAYPEIN VLSHWRHFNR LMPALCVDTE YKG
|
|---|
| |