Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1888 |
Symbol | |
ID | 4278346 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 2232644 |
End bp | 2233285 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 638134672 |
Product | transcriptional regulator, TetR family protein |
Protein accession | YP_750572 |
Protein GI | 114563059 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAGCC GTACTGATAC AAAAACAAGA ATACTCGATG CAGCTGAAAA GTTGTTCGCT GAAAGAGGTT TTTCTGAAAC GTCGTTACGA CTGATCACCA GCAAAGCTGA AGTCAATTTG GCATCTGTTA ATTACCATTT TGGTTCGAAA AAAGAATTAA TTCGTGCTGT ATTAGCAAGA TACTTAGATG TGTTTATGCC AAGCGCCGCG ATAGAGATTA AACGTATACA TCATGCGCCT GAAAATTCGT CACTAAATGA GATTTTTTCT GCTTTAATTA AACCGTTACT TGAGCTTAAT AAAGTACGCA ACGGCGGCAC GATTATTTTC TTGCAGTTGT TAGGTCGTGG TTATATTGAA AGCCAAGGTC ATTTGCGCTG GTTTATTACC ACACATTATG GCGAACATTT AGCGACGTTC GTACAAGCTG TATCGGCAAG TGCACCACAC ATTCCTGCGG CAGAAATGTT TTGGCGTTTG CATTTTACTC TAGGAACTAT AGTGTTCACT ATGGCTTCTG CAGATGCACT AAATGAAATT GCTGCAGCAG ATTATGGCGA ACACAACAAT ATTGAAGCCA TTATACGTAA AGTTATCCCC TACATGGCAG CAGGTGTTGC TGTCCCTGTG TTAACAAACT AA
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Protein sequence | MASRTDTKTR ILDAAEKLFA ERGFSETSLR LITSKAEVNL ASVNYHFGSK KELIRAVLAR YLDVFMPSAA IEIKRIHHAP ENSSLNEIFS ALIKPLLELN KVRNGGTIIF LQLLGRGYIE SQGHLRWFIT THYGEHLATF VQAVSASAPH IPAAEMFWRL HFTLGTIVFT MASADALNEI AAADYGEHNN IEAIIRKVIP YMAAGVAVPV LTN
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