Gene Sfri_1866 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1866 
Symbol 
ID4278326 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp2206663 
End bp2207820 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content41% 
IMG OID638134649 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_750552 
Protein GI114563039 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.32808e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCGAAGTA CAATTACTTT AGATAAAAAA ATCATAGATA TAATTCATTC AACCTTTGAT 
GGTTACGGAC TCGAAATGAA AAAGATAATC GTACTGATTG CCATAGTGCT AGCGGCACTG
TCGGCTTACT ATTTACTGGC TCCTAAAGAA GCGATAGTTC AACGTCCTAG GCCAATACCT
AATGTGGTGG TTGCCAAGGT GGCTATTATG CCTATTCGTG ATGAAGTCGA AGCATTAGGT
ACGGGTAAAG CCTATGAGTC TATTATCGTT ACCTCTAAAG TTACTGAAAT TGTCACCAGT
ATTAATTTCA ATGATGGCGA TTTAGTTAAA AAAGGCTCGT TATTAGTACA ACTCAGAAAT
GACGAACATA AAGCCAAAGT AGCCGTTACC GAAATTAAGT TAGTTGAAAA CCTCCGCGAA
TTAGATCGTA TCCGATCATT GGTTACCAGC AAAACGATTG CAGAATTAGA ACGCGACCGT
TTACAAAGTT TAATTGATAC CACTCGTGCA GAAGTGGCTC AGGCTAAAGC TGCACTCGAA
GACCGCGCAA TTAAAGCCCC ATTTCCAGGT AAATTAGGTT TGCGCCAAGT GAGTGTGGGC
AGCTTAGTGA CCCCAGGTGA GCAAATTAGT ACCTTAGATG ATGTGAGTAA AATTAAATTA
GATTTCTCAG TGCCAGAGCG TTTTATCCAA GAATTACAAC CCGGCAAACT CGTTGAAGCT
AAAGCTGTTG CTTATCCAGA CCGGATATTT AAAGGTGTCG TTACTTCGAT TGATAGCCGC
GTGAACCCAG ATACTCGAGC GGTAGTTGTG CGCGCGGTAA TGCCTAATGA TGATTATAAG
CTACTGCCTG GCATGTTGAT GAAAGTGCGT CTTATTAAGC AAAGTCGCGA AGCATTACTA
TTACCCGAAG CTGCAATTAT TCCTATTCAA AACAAGCATT ATGTTTATGT AGTAAATGCT
GAAAATGTTG TCGAACAGCA ACAAGTTACT TTAGGCAGTC GGACACGTGG TTGGGTTGAA
ATAACCGATG GGCTTAAGGT TGACCAACAA GTGATTATTC GCGGAATTTT AAAAGTTCGA
CCAGGAGATA AAGTTCAAGT TGAACAAGCC GAAAACTTTA AGTTTGCTCA AGTAGAAGGT
ATGGAGAAGT CAGCATGA
 
Protein sequence
MRSTITLDKK IIDIIHSTFD GYGLEMKKII VLIAIVLAAL SAYYLLAPKE AIVQRPRPIP 
NVVVAKVAIM PIRDEVEALG TGKAYESIIV TSKVTEIVTS INFNDGDLVK KGSLLVQLRN
DEHKAKVAVT EIKLVENLRE LDRIRSLVTS KTIAELERDR LQSLIDTTRA EVAQAKAALE
DRAIKAPFPG KLGLRQVSVG SLVTPGEQIS TLDDVSKIKL DFSVPERFIQ ELQPGKLVEA
KAVAYPDRIF KGVVTSIDSR VNPDTRAVVV RAVMPNDDYK LLPGMLMKVR LIKQSREALL
LPEAAIIPIQ NKHYVYVVNA ENVVEQQQVT LGSRTRGWVE ITDGLKVDQQ VIIRGILKVR
PGDKVQVEQA ENFKFAQVEG MEKSA