| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1858 |
|---|
| Symbol | |
|---|
| ID | 4278318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2194988 |
|---|
| End bp | 2196112 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638134641 |
|---|
| Product | 2-methylcitrate synthase/citrate synthase II |
|---|
| Protein accession | YP_750544 |
|---|
| Protein GI | 114563031 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0372] Citrate synthase |
|---|
| TIGRFAM ID | [TIGR01800] 2-methylcitrate synthase/citrate synthase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGACA AGAAATTATC AGGCGCAGGA TTACGCGGTC AGAGTGCTGG CGAAACAAAA
TTATGTACAG TCGGTAAATC AGGTTCAGGC CTAACGTACT GCGGTTACGA TGTCTCTGAT
TTAGCTGATA ACGCTACCTT TGAAGAAGTC GCTTATTTAT TATTTAACGG CGAGTTACCA
AACCAAGCTC AGCTAACTGC ATATAAAGCA GAATTGAAAG CGCAGCGTGA TTTACCTGAT
GCACTAAAAG CGGTATTAAA ATTAATTCCT GCTGATGCTC ATCCAATGGA TGTTATGCGT
ACTGGTTGCT CGTTTTTAGG TAACCTTGAG CCAGAAGTCG ATTTTACTCA GCAACACAAA
GCGTCGAACC GCTTATTAGC CGCATTTCCG GCCATCATGT GTTTTTGGTA CCGTTACACT
CATGACGGTG TAGAAATTGA TTGCACCACC GATGAAGATT CTCTGGGTGG ACATTTTCTT
AAACTGCTTC GCGGTGAAAC GCCGTCAGCG CAACATCGCC GTGTAATGGA TGTGTCGTTG
ATTTTGTATG CAGAGCATGA GTTCAACGCA TCAACCTTTA CCGCGCGTGT ATGTGCTTCA
ACATTATCGG ATATGTATTC TTGTGTTACT GGTGCGATTG GTTCATTACG TGGCCCGCTG
CACGGTGGCG CTAACGAAGC GGCGATGGAT ATGATCCAAA AGTTCAGCTC GCCAGCTGAT
GCTAAAGTGC AAATGGCATT GATGTTAGAA CGCAAAGAAA AAATCATGGG CTTTGGCCAT
GCTATTTATA GCGAGTCTGA TCCACGTAAT GTGATTATTA AGAAGTGGTC TGAAAAGCTG
GCTCACGAAA ACGGTGATAC CTCGCTATAT GACATTTCTG TCGCGTGTGA AGAGTTTATG
TGGGACACAA AAAAATTATT CTGCAATGCA GATTTCTTCC ATGCCTCTGC TTATCATTTT
ATGGGTATTC CAACTAAGTT ATTTACGCCA ATCTTCGTTT GTTCACGTTT AACCGGTTGG
GCGGCACATG TAATGGAGCA GCGATCGAAC AACCGCATTA TACGTCCAAG TGCAGATTAT
GTGGGCAGTG AGCCTCGTAA AGTGGCGCCT ATCAGCCAAC GTTAA
|
|---|
| Protein sequence | MVDKKLSGAG LRGQSAGETK LCTVGKSGSG LTYCGYDVSD LADNATFEEV AYLLFNGELP
NQAQLTAYKA ELKAQRDLPD ALKAVLKLIP ADAHPMDVMR TGCSFLGNLE PEVDFTQQHK
ASNRLLAAFP AIMCFWYRYT HDGVEIDCTT DEDSLGGHFL KLLRGETPSA QHRRVMDVSL
ILYAEHEFNA STFTARVCAS TLSDMYSCVT GAIGSLRGPL HGGANEAAMD MIQKFSSPAD
AKVQMALMLE RKEKIMGFGH AIYSESDPRN VIIKKWSEKL AHENGDTSLY DISVACEEFM
WDTKKLFCNA DFFHASAYHF MGIPTKLFTP IFVCSRLTGW AAHVMEQRSN NRIIRPSADY
VGSEPRKVAP ISQR
|
|---|
| |