| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1835 |
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| Symbol | |
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| ID | 4278102 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2166579 |
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| End bp | 2167826 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134619 |
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| Product | putative branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein |
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| Protein accession | YP_750522 |
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| Protein GI | 114563009 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.133741 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACATA AAGCAAAATT AAGTTCTCTA TTCGTATACT GTGCTTTGGG GATGAGCACT
CAGGTAATAG CAGAAGATTC TGTATTTGTC GGACATTTAG CCGACATGTC AGGACCAACA
GCCTTTGTGG GTAAAAACTA TGCTGATGGT GTGCGAGATT CACTCGCTTA CATTAATGCT
AACGGTGGTA TTAAAGGCAC AACCTTAGAA TATGAAACTA TCGACTATGC CTACAAAGTA
CCACAAGCCA TCGCATCATA TAAAAAATGG CATTCACGTA AAAAAATGGT CGCGATGCAA
GGTTGGGGAA CCGCTGATAC TGAAGCGTTA ATTTCTTTTG TTGCAAAAGA TAAAATTCCA
GTTTTTTCAG CGTCATACTC TGGTCATTTA ACTGATCCTA CCGGAAAAAA TCCACATACT
AAAAAACCAG CACCTTATAA CTTTTTTTAT GGCGCCTCTT ACTCAGATGC TTGTCGTGGT
TTAGTGCAAT GGGCGGCACA AGATTGGAAA GACAAAGGTG AAAAAGGTAA GCCTAAATTC
ACTCATATCG GTGCCAATCA TCCATTTCCT AACGCACCCA AAGCGGCATG TGCGGAATAC
GCTACTGAAC TCGGTTTTGA TGTACAACCA TCGATTGTTA TTTCAATGAA ACCCGGTGAC
TTTAAGGCGC AATGTTTAAG TTTAAAAAGT TCAGGTTCTA ACTATGGTTA CATTGGTAAC
TTAGGCGGTT CAGTGCTTTC ACTGGTGAAA TCTTGTAACA CCGTAGGTAC TGATATTCAA
TTTATGTCGA ATATTTGGGG CGGGGATAAG AATATCTTCG CAGCCGCGGG CGAAGGGATA
AAGGATTATA TTTTCCCGAC CATGACACCC TTTTGGAATG ATGATGCGCC TGGTATGAAG
CTAGTACGTG AAATATCTAA GCAGTCTGAT AAGTCAGGTA CAGAAGAGCG TGTTCATCAT
TATATGCGCG GTGTTTGTTC AACCTTCTTT ATGAAAGAAG CAATGGAATG GGCAAAAGAT
AACGGTGGTA TTACCGGTGA AAATGTGAAA AAAGGCATGT ACGTGCATAA AAACTGGGTG
CCAAAAGGGT TAGAGGGCGT GTGTTTAGCG GCTAATTGGA GTAATGAAGA CCATCGTGGA
ATTAACCAGG TCAATATCTA TAAGGGTAAC TATAACGGCG GTGATGTCGT CGTAGAGAAG
GTATCGCAAG TTACGCTAGA GCGTCGAGAC GATTGGTTAG GTTTTTAA
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| Protein sequence | MQHKAKLSSL FVYCALGMST QVIAEDSVFV GHLADMSGPT AFVGKNYADG VRDSLAYINA
NGGIKGTTLE YETIDYAYKV PQAIASYKKW HSRKKMVAMQ GWGTADTEAL ISFVAKDKIP
VFSASYSGHL TDPTGKNPHT KKPAPYNFFY GASYSDACRG LVQWAAQDWK DKGEKGKPKF
THIGANHPFP NAPKAACAEY ATELGFDVQP SIVISMKPGD FKAQCLSLKS SGSNYGYIGN
LGGSVLSLVK SCNTVGTDIQ FMSNIWGGDK NIFAAAGEGI KDYIFPTMTP FWNDDAPGMK
LVREISKQSD KSGTEERVHH YMRGVCSTFF MKEAMEWAKD NGGITGENVK KGMYVHKNWV
PKGLEGVCLA ANWSNEDHRG INQVNIYKGN YNGGDVVVEK VSQVTLERRD DWLGF
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