| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1828 |
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| Symbol | |
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| ID | 4278096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2156065 |
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| End bp | 2156715 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 638134613 |
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| Product | two component transcriptional regulator, LuxR family protein |
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| Protein accession | YP_750516 |
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| Protein GI | 114563003 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTAA ATACTAAGAT CATTATCGCA GATGACCACC CACTTTTTAG ACAAGCATTG
TCGTTCATGT TGAAGTCTAG CTTTGTTTGT TCTTGTTTAC TTGAAGCACA GACGATTCCT
GAATTAGAGC AAAAATTGGA AGAAACCTCT GATATCGATC TGATACTACT TGATCTTGAT
ATCCCGGGGG CACAAGGTTT TAACACTTTG ATTAATATTC GACACACATA TCCAGAAATT
GGTGTGATTG TTATTTCTGG TTTTGAAGAG CCTGAAACGA TTCGTAAGGC CATGAACTTA
GGTGCTGCGG GGTTTATACC TAAGTCGACA CCTGTACCGA CAATGATCAA AGCAATTAAT
GATGTTATTA ACGGGAAGTT ATGGACGCCA ATCGGAAGTT ATAATCCTGA TGATGATATC
GTAGAACAAG AAGATAAGTT GACATCATTA ACACCACAGC AACGGAAAAT ATTATTGATG
TTTGCTGAAG GTTTGCTTAA TAAGCAAATA GCTTATGAGC TTAATCTTTC AGAATCCACA
ATAAAAAGCC ATGCAAGTAC TATATTTTTA AAGCTAGGCG TAAAAAATCG CACACAAGCC
GTTATTCTAT TAAATGATCG TCAAATGGCA AATGCATCTT TTACACAGTA G
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| Protein sequence | MTLNTKIIIA DDHPLFRQAL SFMLKSSFVC SCLLEAQTIP ELEQKLEETS DIDLILLDLD
IPGAQGFNTL INIRHTYPEI GVIVISGFEE PETIRKAMNL GAAGFIPKST PVPTMIKAIN
DVINGKLWTP IGSYNPDDDI VEQEDKLTSL TPQQRKILLM FAEGLLNKQI AYELNLSEST
IKSHASTIFL KLGVKNRTQA VILLNDRQMA NASFTQ
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