| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1815 |
|---|
| Symbol | |
|---|
| ID | 4277454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2141736 |
|---|
| End bp | 2142707 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638134600 |
|---|
| Product | heat shock protein DnaJ domain-containing protein |
|---|
| Protein accession | YP_750503 |
|---|
| Protein GI | 114562990 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTA AAGACTATTA CACTGTATTA GGCATCGATC CTAAAGCGAA TGATAAAGCG
GTTAAAGTCG CTTATAAAAA ACTCGCCGTG CAGTATCATC CTGACGTGAG TAAACATCCA
GATGCTGAGG CGAAATTCAA AGAAATAGGT GAAGCCTATG AGGTGTTACA TAACACTAAA
AAGCGTGCCG AGTATGACGA ATTACGTCAT CATCACCTTA ATAGAACCCA AAATCGTTAT
GCCAATCAAG GCGCAGCGAA TGGTGCAGGG CAAACCTGGG GACAACAGCA AAGCGATCCA
CAAACCGATC AAGAGTTTTC AGACTTTTTT AGTTCAATTT TTGGCTCTAG CCGCGGAGGT
TTTGAACAAG GTAGCCAACA TAGACAGCGC CAAACTCAGC CTCAAAAAGG CCAAGACATT
GAAATTGAGT TTCCGATGTT TCTTGAAGAA ACATTGGTCG ATACTCTAAA GCCAGTCGAG
TTTACCTTAC AACAACGGGA TCCCAGCGGT CGTATCGTTG AGCAACCTAA ATTGTTAAAA
GTTAAAATTC CTGCTGGCGT TGTTAATGGT GAACGTATTC GCTTGAAAGG ACAGGGCGGT
CCGGGACCGA CCAAGGCAGA TAACGGTGAT CTGTACTTAC AAATTCGTTT TGTGCCTCAT
CCCATGTTTG ATGTTGATGG TCGAGATTTA AGTATTGTTG TACCCGTAGC ACCATGGGAA
GCAGTGCTGG GTACCAAGCT TAAACTTCCC ACGTTAACCA GTCATATTCA ACTGACTATC
CCTGCTAATA GTCAGTCAGG ACAGCGTTTA CGTATAAAAG GAAAAGGCTT ACTCAGTAAA
AAAGTACATG GGGACTTATT TGCGGTACTC AAAATAGTCG TCCCGACATC GCCAGATGAA
GCAAGCAAAC AATTGTGGAC TGAATTAGCA GAGAAAAATA TATTCGACCC ACGTGCCAGT
TGGAGTAAAT AA
|
|---|
| Protein sequence | MNFKDYYTVL GIDPKANDKA VKVAYKKLAV QYHPDVSKHP DAEAKFKEIG EAYEVLHNTK
KRAEYDELRH HHLNRTQNRY ANQGAANGAG QTWGQQQSDP QTDQEFSDFF SSIFGSSRGG
FEQGSQHRQR QTQPQKGQDI EIEFPMFLEE TLVDTLKPVE FTLQQRDPSG RIVEQPKLLK
VKIPAGVVNG ERIRLKGQGG PGPTKADNGD LYLQIRFVPH PMFDVDGRDL SIVVPVAPWE
AVLGTKLKLP TLTSHIQLTI PANSQSGQRL RIKGKGLLSK KVHGDLFAVL KIVVPTSPDE
ASKQLWTELA EKNIFDPRAS WSK
|
|---|
| |