| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1796 |
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| Symbol | |
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| ID | 4277435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2119334 |
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| End bp | 2119978 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134580 |
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| Product | outer membrane lipoprotein carrier protein LolA |
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| Protein accession | YP_750484 |
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| Protein GI | 114562971 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
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| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000178972 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATAAAC GTATTACAGT ATTAAGCCTA TTACTAGCCA CAAGTTTAAG CAGCGCTGCC
GCAATGGCCG ATGACGCAAC CGAATTACGC GCTAAGCTAT CTAATATTGA TAGCTTACAT
GCGACATTTT CCCAGCAAGT GACTGACATT AACAGTAAGC CTATTCAAAC TGGAAGCGGG
GTATTTGCAC TTGCGTATCC GAATCAATTT TACTGGCATT TAACTCAGCC AGACGAATCA
TTAATTGTGG CTGATGGCGC TAATTTATGG ATTTATAATC CTTTTGCGGA AGAAGTGACT
GTGATGGATG TTGCTCAAGC CGTTGATGCA TCACCTATGG CTTTGTTAGT GCATCGAGAC
GAAGCCACAT GGGCTAAGTA TTCGGTCACT AAGCGTGCCG TAAGCGGAAA ATCAACCTGT
TTTGATATTC AACCTAAAAA ACTTAACAGC AATGTTGTAG CCGTGAGTGT GTGTTTTGAA
GCTAGCCAGT TAGTTAAATT TAACTTAACT GACGAGCAAG GCAACCTAAG TCAATTTGCC
TTAACTCAAC AACGTAAAGT GAAAGACAAC GAAGCAAACA TATTTAAGTT TGCCGTGCCT
GATAACGTTG ATATAGACGA TCAACGTTTA AAGCAAGCTA ACTAA
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| Protein sequence | MNKRITVLSL LLATSLSSAA AMADDATELR AKLSNIDSLH ATFSQQVTDI NSKPIQTGSG
VFALAYPNQF YWHLTQPDES LIVADGANLW IYNPFAEEVT VMDVAQAVDA SPMALLVHRD
EATWAKYSVT KRAVSGKSTC FDIQPKKLNS NVVAVSVCFE ASQLVKFNLT DEQGNLSQFA
LTQQRKVKDN EANIFKFAVP DNVDIDDQRL KQAN
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