| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1765 |
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| Symbol | |
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| ID | 4277544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2072692 |
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| End bp | 2073825 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134549 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_750453 |
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| Protein GI | 114562940 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.803337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATAATG ATGTAGTTGA ATTAGCAAAA GATCTGATAT CACGTCCATC GGTAACACCA
TTGGATGAGG GTTGCCAAAC CTTAATGGCC AATCGCCTTG CCGCTGTTGG CTTTAATATT
GAACCGATGG TTTTTGAAGA CACCACCAAT ATGTGGGCAA GACGCGGTAA CTGTGATCCG
GTTTTCTGCT TTGCAGGTCA TACCGATGTA GTCCCAACTG GCGATCTTAA CCGTTGGCAT
ACTCCTCCGT TTGAACCGAC CATTATTGAT AACTATTTAC ATGGTCGCGG CGCAGCAGAC
ATGAAAGGAT CATTAGCCGC GATGATTATC GCGACCGAAC GATTTGTTGC TAAACATCCA
GACCACAATG GCTCTATTGC TTATTTAATT ACCAGTGACG AAGAAGGTCC ATTTATAAAC
GGCACCACGC GGGTTATTGA TACGCTCGAA GCTCGTAATG AAAAAATGAC ATGGGCGCTA
GTTGGCGAAC CTTCTTCAAC TCATAAATTA GGTGATGTCG TCAAAAATGG TCGTCGTGGA
AGTTTAACTG GCAACTTAAC TGTTAACGGA ATTCAAGGCC ATGTTGCCTA TCCACATTTA
GCCGACAACC CTATTCATAA AGCGGTTCCA GCACTAACTG AACTCGCACA AATGCATTGG
GATAATGGTA ATGAGTTTTT CCCACCGACC AGTTTCCAAA TTGCTAACAT TAATGGCGGT
ACTGGTGCAT CGAATGTTAT CCCCGGTGAA TTAACCGTGA TGTTTAACTT CCGTTACTCT
ACCGAAGTGA CCGCAGAAGA ATTGATCCTG CGGGTGGTGA GTATTCTTGA TGCTCATGGC
TTAGATTATG ATATCAACTG GATTTTTAAT GGTTTACCGT TCTTAACGGG TGACGGCCCA
CTGCTTGATG CCACACGGGA AGCGATTCGC GAAGTCACAG GTTATGAAAC CGACCCACAA
ACTTCAGGTG GTACCTCAGA TGGTCGCTTT ATCGCACCAA CTGGCGCACA AGTGTTGGAG
TTAGGCCCTG TCAACGCGAC AATTCATAAA GTGAATGAAT GCGTTAACGT GGCCGACTTA
GAGATATTAG CCAATTGCTA TGAACGCATT TTGGAAAAGT TATTGTGCAA ATAA
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| Protein sequence | MNNDVVELAK DLISRPSVTP LDEGCQTLMA NRLAAVGFNI EPMVFEDTTN MWARRGNCDP
VFCFAGHTDV VPTGDLNRWH TPPFEPTIID NYLHGRGAAD MKGSLAAMII ATERFVAKHP
DHNGSIAYLI TSDEEGPFIN GTTRVIDTLE ARNEKMTWAL VGEPSSTHKL GDVVKNGRRG
SLTGNLTVNG IQGHVAYPHL ADNPIHKAVP ALTELAQMHW DNGNEFFPPT SFQIANINGG
TGASNVIPGE LTVMFNFRYS TEVTAEELIL RVVSILDAHG LDYDINWIFN GLPFLTGDGP
LLDATREAIR EVTGYETDPQ TSGGTSDGRF IAPTGAQVLE LGPVNATIHK VNECVNVADL
EILANCYERI LEKLLCK
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