| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1698 |
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| Symbol | |
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| ID | 4277724 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2004315 |
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| End bp | 2006225 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638134483 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_750387 |
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| Protein GI | 114562874 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGATT GGTCTATCGA AGATGCTCGC TCGGGTTATA ACGTGACTCA CTGGAGCCAA
GGTTTTTATG GTATTCGTGA AGATGGCGAA GTGACTGTGT CACCTAACCC ACAAAATCCT
GATCATAAAG TTGGCTTAAA TGAATTAGCC AAAAGTATGG TCGAAGCAGG CGTCTCGTTA
CCGGTATTAG TCCGTTTCCC GCAAATCTTA CACCATAGAG TGGAAAGTTT ATGCGAAGCA
TTTAATGATG CTATTAAGAA GTACGATTAT CAAAATGATT ACTTGTTAGT TTACCCAATT
AAAGTAAACC AACAGAAAAC GGTAGTTGAA GAAATTTTAG CTAGCCAAAA ATCTAAAGAA
GTCCCTCAGT TAGGACTTGA AGCAGGTAGT AAGCCAGAGT TAATGGCTGT ACTTGCGATG
GCACAAAAAG CCAGTTCAGT CATTGTATGT AATGGTTACA AAGATAAAGA ATACATTCGT
TTAGCACTTA TCGGCGAAAA GCTTGGCCAT AAGGTGTATA TCGTTCTGGA AAAAATGTCA
GAACTTAAAA TGGTACTAAT TGAAGCTGAA AAGCTTGGTA TTACACCTCG CTTGGGTTTA
CGTGTGCGTT TGGCGTTCCA GGGCAAAGGT AAATGGCAAG CCAGCGGTGG TGAAAAGTCT
AAATTTGGTT TGTCTGCTGC ACAAGTGTTG AAAGTTATAG CTGAATTGAA AAGTGCTAAT
ATGCTTGATT CTCTGCAGTT ATTACATTTC CATTTAGGTT CGCAAATTGC CAACATTCGC
GACATTCGCC AAGGCGTAAG TGAAGCCGGT CGTTTTTACT GTGAATTGCG CCAACTCGGT
GCCAGCATTG ACTGTTTCGA TGTGGGCGGC GGATTAGCGG TTGACTACGA CGGTACTCGT
AGCCAAAGCA ATAACTCAAT GAACTATGGT TTAAATGAGT ATGCCAACAA TATCGTCAAC
GTATTAACCG ATTTATGTAA TGAGTACGAG CAACCAATGC CGCGTATTAT TTCTGAATCT
GGTCGCCATT TAACGGCGCA TCACGCGGTG TTAATTACTG ATGTTATTGG TACTGAAGCG
TATCAACCAG AAAATATTCA GGAACCAAGT GAAGATGCGC CGCAATTGCT CCACAATATG
TGGCAATCTT GGTTAGAAAT CAGCGGTCGA TATGATCAAC GTGCGATTAT TGAAATTTAT
CATGATAGTC AGAGTGATAT TTCTGAAGCA CATTCATTAT TTGCTGTGGG TCAATTAAGT
TTGGCTGACC GAGCTTGGGC TGAACAAGCT AATTTACGTG TTTGCCATGA AGTGAAGGGA
TTATTAAGTA ACAATAACCG TTATCACCGC CCAGTGATTG ATGAATTAAA TGAAAAGTTA
GCCGATAAGT TTTTTGTTAA CTTCTCTTTA TTCCAGTCAT TACCTGATGC ATGGGGTATT
GATCAAGTGT TCCCTGTGTT GCCGTTATCG GGTTTAGATA AAGCACCAGA GCGCCGTGCG
GTTATGTTAG ATATTACCTG TGACTCAGAT GGTATTGTTG ATCAATATGT TGACGGTCAA
GGCATTGAAA CCACGTTGCC AGTCCCAGCA TGGAGCGCCG ACAGCCCATA TTTGATTGGT
TTCTTTATGG TGGGTGCATA CCAAGAAATC TTGGGTGATA TGCATAACTT GTTTGGTGAT
ACCAACTCTG CGGTTGTGCG TATTGATGAG CGTGGTTTAA GCCAGATTGA ATCTGTTTTA
GAAGGCGACA CAGTTGCTGA CGTTTTACGT TATGTGAACT TAGATGCTGT TGACTTTATG
CGCACCTATG AAGAGCTTGT GAATCAGCAT ATTGTTGAAG AAGAGCGTGC CAGCATTCTA
GAAGAGTTAC AGTTAGGGCT TAAAGGTTAC ACTTACTTAG AAGATTTTTA A
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| Protein sequence | MSDWSIEDAR SGYNVTHWSQ GFYGIREDGE VTVSPNPQNP DHKVGLNELA KSMVEAGVSL
PVLVRFPQIL HHRVESLCEA FNDAIKKYDY QNDYLLVYPI KVNQQKTVVE EILASQKSKE
VPQLGLEAGS KPELMAVLAM AQKASSVIVC NGYKDKEYIR LALIGEKLGH KVYIVLEKMS
ELKMVLIEAE KLGITPRLGL RVRLAFQGKG KWQASGGEKS KFGLSAAQVL KVIAELKSAN
MLDSLQLLHF HLGSQIANIR DIRQGVSEAG RFYCELRQLG ASIDCFDVGG GLAVDYDGTR
SQSNNSMNYG LNEYANNIVN VLTDLCNEYE QPMPRIISES GRHLTAHHAV LITDVIGTEA
YQPENIQEPS EDAPQLLHNM WQSWLEISGR YDQRAIIEIY HDSQSDISEA HSLFAVGQLS
LADRAWAEQA NLRVCHEVKG LLSNNNRYHR PVIDELNEKL ADKFFVNFSL FQSLPDAWGI
DQVFPVLPLS GLDKAPERRA VMLDITCDSD GIVDQYVDGQ GIETTLPVPA WSADSPYLIG
FFMVGAYQEI LGDMHNLFGD TNSAVVRIDE RGLSQIESVL EGDTVADVLR YVNLDAVDFM
RTYEELVNQH IVEEERASIL EELQLGLKGY TYLEDF
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