Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1692 |
Symbol | rrmA |
ID | 4277718 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 1998454 |
End bp | 1999275 |
Gene Length | 822 bp |
Protein Length | 273 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638134477 |
Product | 23S rRNA methyltransferase A |
Protein accession | YP_750381 |
Protein GI | 114562868 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.653904 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTTATA TTTGCCCTAT TTGTAGCGCA CCATTAGTAC AACAACAAAA TTCTTGGCAA TGTGAACAGC GCCATCAATT TGATTGTGCT AAAGAAGGTT ACGTTAATTT ACTGCCTGTA CAAAAAAAGA AAACTAAAGA TCCCGGTGAT AACAAAGAAA TGATGATCGC TAGACGAGAG TTTCTTAATC AAGGCTTTTA TCAACCGTTA AGCGACAAAG TAAATCAGTT AGCGCTAGAA TTTGCTGGAG ATGCTACTAA GGTGCTCGAT ATAGGTTGTG GCGAAGGGTA TTACAGTCAT CGATTATTCG AAACGTTGCA ATCTGTGGTT AACCCCCAGA GTGAGTTTTA TGGTTTAGAT ATTTCTAAGT CTGCCATTCG CTATGCGGCT AAACGCTATT CTGGGTTACA TTTTTGTGTG GCAAGTGCAT TTGAAATGCC TTTTGCTGAT GACAGTTTTG ATTTAGCGAT ACGTATTTAT GCGCCGTCTA AAATTGAAGA GTTACAGCGG GTGATAAAAC CAACCGGAAT ACTCATTACC GTTTCTCCTG GGCCGATGCA TCACTATGCG TTAAAAAAGA AAATTTATAG TGAACCCAAA TTGCATCCAC AAGAGCCTAT GGTGTTAGAT GGCTTTACTT ACTTAGGACA CCAAGCGTTA GCCTATTCAT TAACATTAAC TCGTGCGGAA GATATTGATC ATTTCCTTAA TATGACACCT TACGCATGGA AATTGAGTGA TTCACAGAAG TCTCAGATAA TAGAGCAAGG GCTCGAGTGT GAGATAGATT TTAAAATCGA AATTCATAAA CGCGAACAAT AA
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Protein sequence | MSYICPICSA PLVQQQNSWQ CEQRHQFDCA KEGYVNLLPV QKKKTKDPGD NKEMMIARRE FLNQGFYQPL SDKVNQLALE FAGDATKVLD IGCGEGYYSH RLFETLQSVV NPQSEFYGLD ISKSAIRYAA KRYSGLHFCV ASAFEMPFAD DSFDLAIRIY APSKIEELQR VIKPTGILIT VSPGPMHHYA LKKKIYSEPK LHPQEPMVLD GFTYLGHQAL AYSLTLTRAE DIDHFLNMTP YAWKLSDSQK SQIIEQGLEC EIDFKIEIHK REQ
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