Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_1628 |
Symbol | |
ID | 4277287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 1937928 |
End bp | 1939646 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638134413 |
Product | acetolactate synthase 3 catalytic subunit |
Protein accession | YP_750317 |
Protein GI | 114562804 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAGC TTTCTGGCGC GAGTATGATC GTGCGCTCAC TAATAGATGA AGGTGTCAGC CATATCTTCG GTTATCCCGG CGGTTCGGTG TTAGACATCT ATGATTCTCT GCATAAAATA TCTGGTATTG AACACATCCT AGTTCGTCAT GAACAAGCTG CTGTACACAT GGCTGATGGT TATGCCCGTG CAACTGGCAA AGTTGGTGTC GTGTTAGTCA CTTCAGGCCC TGGTGCTACC AATGCTATTA CAGGTATTGC CACCGCTTAC ATGGATTCAA TCCCACTGGT TGTGTTGTCT GGTCAAGTGC CGAGTAATTT GATTGGTAAT GATGCCTTCC AAGAATGCGA CATGATTGGT ATTTCTCGCC CAATCGTTAA GCACAGTTTT TTAATAACAG ACGCTAAAGA CATTCCAGAA ACAGTTAAAA AAGCCTTTTT CATTGCCGCT ACTGGCCGCC CGGGCCCTGT GGTCATTGAT TTGCCTAAAG ACTGTTTAAG CCCAGATATA CTGCATGATT ATGTTTATCC AGACAGCGTT AAAATGCGTT CGTATAACCC CACTACATCA GGTCATAAAG GCCAAATTCG TCGAGGCTTG CAAGCCCTGT TAGCGGCTAA AAAACCGGTA TTATATGTCG GTGGTGGCGC GGTTATTTCG GGTTGTGATG CACAAATACT TGCCCTTGCC GAACGTTTAA ACATCCCCGT CGTGAGTACC TTGATGGGCT TAGGCGCGTT TCCTGGCACC CATAAGCAGA GTTTAGGCAT GCTAGGAATG CATGGTTTAT ACGAAGCGAA TATGGCAATG CACAACACCG ATTTAATCTT TGGTATTGGG GTCCGTTTTG ACGACCGCAC CACCAACAAT GTTGAAAAGT ATTGTCCTAA CGCAACCATT TTACACATCG ATATTGATCC ATCTTCTATC TCTAAAACGG TTCGGGTCGA TATTCCAATT GTTGGCTCTG CCGATAATAT TTTAGACGGC ATGTTAGATC TACTTGATGA ATCAAAAGAC ACTAATGATG CTACCGCGAT GGCTGCATGG TGGAGCGACA TTGAAATTTG GCGTTCACGT AAGAGCTTAG AGTTCGATCG CACTACCGAT AGAATCAAAC CACAACAAGT TATTGAAACA TTGTACAAAC TCACCAATGG TGACGCTTAT GTGGCGTCGG ATGTCGGCCA GCATCAAATG TTTGCCGCGT TATATTACCC GTTCGATAAA CCACGCCGTT GGATTAACTC AGGTGGATTA GGCACCATGG GCTTTGGTTT GCCTGCGGCA ATGGGCGTTA AAATGGCGTT CCCTGAAGCT ACCGTGGTGT GCGTTACGGG CGATGGTTCT ATCCAAATGA ACATTCAGGA GCTTTCAACG GCACTGCAAT ATGATACTCC GGTTAAAATT ATCAACCTAA ACAACCGTTT CCTTGGCATG GTAAAACAGT GGCAAGACAT GATTTATTCA GGTCGTCATT CCCATTCTTA TATGGATTCT GTGCCTAATT TTGCCAAAAT TGCTGAAGCC TATGGTCATG TTGGTATGAA CATTAGTCAC CCAGATGAAC TTGAATCTAA GCTCGCTGAA GCGTTGGCGA TGAAAGACAA GTTAGTGTTT GTTGATATCA GCGTAGATGA AACGGAACAC GTTTACCCAA TGCTCATTCG CGGCGGCGCG ATGAACGAAA TGTGGCTAAG CAAAACGGAG AAAAGCTAA
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Protein sequence | MEKLSGASMI VRSLIDEGVS HIFGYPGGSV LDIYDSLHKI SGIEHILVRH EQAAVHMADG YARATGKVGV VLVTSGPGAT NAITGIATAY MDSIPLVVLS GQVPSNLIGN DAFQECDMIG ISRPIVKHSF LITDAKDIPE TVKKAFFIAA TGRPGPVVID LPKDCLSPDI LHDYVYPDSV KMRSYNPTTS GHKGQIRRGL QALLAAKKPV LYVGGGAVIS GCDAQILALA ERLNIPVVST LMGLGAFPGT HKQSLGMLGM HGLYEANMAM HNTDLIFGIG VRFDDRTTNN VEKYCPNATI LHIDIDPSSI SKTVRVDIPI VGSADNILDG MLDLLDESKD TNDATAMAAW WSDIEIWRSR KSLEFDRTTD RIKPQQVIET LYKLTNGDAY VASDVGQHQM FAALYYPFDK PRRWINSGGL GTMGFGLPAA MGVKMAFPEA TVVCVTGDGS IQMNIQELST ALQYDTPVKI INLNNRFLGM VKQWQDMIYS GRHSHSYMDS VPNFAKIAEA YGHVGMNISH PDELESKLAE ALAMKDKLVF VDISVDETEH VYPMLIRGGA MNEMWLSKTE KS
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