| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1536 |
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| Symbol | |
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| ID | 4277772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 1827974 |
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| End bp | 1828810 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638134316 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_750225 |
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| Protein GI | 114562712 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.370191 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGATG TTTTACCACT ATTAGGTAGT GGATTGGTTA TTTGCGGAGC GCTATTACTT
GCAATGGCTA TCACACCGGT ATGGACAATA TTTCGCCGAC TTCCAACCGG CGAATTGCGC
CACAGTTGGG GTTTTCTAAT TCTGCTGATC CTTTTTTTTA TCATAGGTTA TGTCATTTAT
GCAAAATTTA GCTTGGTGAC ATTTTCTCAA CCACTTGATC TAGTGGTGCC GGTGATATTT
TTTTGCGGAG CTATTTTTGT ATTTGTTGTT TGTAGCCTGT CCCTCAAAAC CACCAGTGAC
ATTATGCAGA TGCATGCCCT TAAACAAGAA AACATCACCG ACTCATTAAC AGGTATATTT
AACCGCCGAT ACTTAGATCG TCGCCTGAAA GAAGAAACGC AAAGGGCGCA AAGTTATTCT
AAACCACTAT CCATCTTCCT TATCGATATC GACCATTTCA AAAACATTAA TGATAAGTAT
GGTCATCAGA TTGGTGACTT AGTTTTGAAA AATATCGCCC AGAACATTAA AATGTCGTTA
AGAGAATCAG ATATAGTGGC TCGTTATGGT GGTGAAGAGT TTATTGTCAT CCTCCCGCTA
ACCCAAGTAT CTACATCTTA TACACTTGCT GAACGACTCA GGACTATTAT CGAAAACATT
CAGCTGGCAC TGCCTAGTGA GTCTGAAATA GATATACTTT CCATTGGTGT CACAGTGAGT
GTAGGTGTGG CTGGAATGAC ATCTGAATGT AAAGACTACC AGTGCCTGAT TAAAAATGCA
GACAGGGCAC TCTATCAATC AAAACAAAAT GGCCGCAACC AAGTAAGAGT GGCTTAA
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| Protein sequence | MQDVLPLLGS GLVICGALLL AMAITPVWTI FRRLPTGELR HSWGFLILLI LFFIIGYVIY
AKFSLVTFSQ PLDLVVPVIF FCGAIFVFVV CSLSLKTTSD IMQMHALKQE NITDSLTGIF
NRRYLDRRLK EETQRAQSYS KPLSIFLIDI DHFKNINDKY GHQIGDLVLK NIAQNIKMSL
RESDIVARYG GEEFIVILPL TQVSTSYTLA ERLRTIIENI QLALPSESEI DILSIGVTVS
VGVAGMTSEC KDYQCLIKNA DRALYQSKQN GRNQVRVA
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